Silurus meridionalis (southern catfish): 124376220
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Entry
124376220 CDS
T08004
Symbol
colgalt1a
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo00310
Lysine degradation
smeo00514
Other types of O-glycan biosynthesis
smeo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
124376220 (colgalt1a)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
124376220 (colgalt1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
smeo01003
]
124376220 (colgalt1a)
Enzymes [BR:
smeo01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
124376220 (colgalt1a)
Glycosyltransferases [BR:
smeo01003
]
O-Glycan biosynthesis
O-linked Gal type
124376220 (colgalt1a)
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Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
LysX_preATP_grasp
Motif
Other DBs
NCBI-GeneID:
124376220
NCBI-ProteinID:
XP_046691164
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Position
22:3894282..3909828
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AA seq
606 aa
AA seq
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MFGLVLCFLFLLSITGPVLGYFPEERWSPESPLLAPRVVVALICRNSAHSLPYFLGTIER
LNYPKDRIALWVATDHNADNTTYLLRDWLVSVQKLYHYVEWRPKEQPSAYDDEEGPKQWT
SDRYAHVMKLHQAALESAREMWADYLLVVDCDNLLVNRDVLWKLIKENKTIVAPMLESRA
AYSNFWCGMTAQGYYKRTPAYIPIRKQMRKGCFAVPMVHSTFLIDLRKEASSLLAFHPPH
DDYTWAFDDIIVFAFSARMAEVQMFVCNKEVYGFLPVPLRSHNTLQDETDSFLHTVLEVN
VRHPPVEPSRYLRPPFRQPDKLGFDEVFMINLQRRADRRVRMLRALRLQGIDCKIMPAVD
GKAMNVSEIHSMGIHMLPGYSDPYHGRPLTKGELGCFLSHYNIWKEIAERGLKTSLVIED
DLRFEIFFKRRLKNLMSEVEREGLDWDLIYIGRKRMQVDHPEKAVPNIHNLVEADYSYWT
LGYMMSLQGAKKLLKAEPLKKMLPVDEFLPVMFNKHPVSDYMEQFETRDLKAFSAEPLLV
FPTHYTGEAGYISDTETSTVWDNDSVRTDWDRKRSRKTHEQDKISTEAQNTDVLQSPLDS
TARDEL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgttcgggcttgttttgtgcttcttgtttttgctgagcattaccggcccggttctcggt
tactttcccgaggagcgctggagtcccgaatcccctcttctggctccgagggtcgtcgtt
gctctcatctgccggaattcggcccactccctgccgtacttcctcggaaccattgaacgc
ttgaactacccgaaggaccgcattgcgctttgggttgcgactgatcataatgcggacaat
acgacgtatctgctccgagattggctggtcagcgtacagaagctgtaccactatgtggag
tggagacctaaagagcagcccagtgcctacgacgatgaggaaggacccaaacaatggacg
agcgaccggtatgctcacgtgatgaagctgcaccaggctgcgctggaatcggcccgagag
atgtgggctgactatttactggtggttgactgtgacaacctcttggtcaaccgggatgtg
ttgtggaagctgattaaagaaaacaagaccatcgttgcgccgatgctggagtcccgagct
gcttattccaacttctggtgtgggatgaccgctcagggttactataagcgcacacctgcg
tacatccccatacgcaagcagatgaggaaaggctgctttgccgtgcccatggttcactcc
acctttctgatagatcttcgaaaagaagcgtctagtctcctcgcctttcaccctccgcat
gatgactacacctgggccttcgacgacattatagtgtttgccttctcagcccgaatggca
gaggtgcagatgttcgtatgtaacaaagaggtgtatgggtttctaccagttcccctgcgc
tcccataacacgctacaggacgaaactgacagcttccttcacactgtcctggaggtcaat
gtgcgacatcctcctgtcgagccctccaggtatctccgacctcccttcagacagcctgat
aagttgggcttcgatgaggtgttcatgataaacctgcagcggcgggctgatcggcgagtg
cgcatgctcagagcgctccgcctgcaggggatcgactgcaagatcatgcctgctgtcgat
ggcaaagccatgaacgtgagcgagatccacagtatggggatccacatgcttccaggctac
agcgatccctaccacggccgacctctgaccaaaggagagcttggctgcttcctgtctcat
tacaacatctggaaagagattgccgagcgtggcctgaagacctccctggtgatcgaggat
gatttgcggttcgagattttcttcaaacggcgcctgaagaacctgatgagtgaggtggag
agagaggggctcgactgggacctcatttacatcgggagaaagaggatgcaggtggaccat
ccggaaaaagccgtgccaaacatacacaacctggtggaggcggattattcgtactggacg
ctgggttatatgatgtcactgcaaggagccaaaaagctgctgaaggctgaaccactgaaa
aagatgctgcctgtggacgaatttcttcctgtcatgttcaataaacatcctgtctcagac
tacatggagcagtttgagacgcgagacctgaaggcgttctcggccgagcccttgctcgtc
ttccccactcactacacgggcgaggcaggttatatcagcgacacggagacgtccaccgtg
tgggacaacgacagcgtgcgcacagactgggacagaaaacgttcgcgtaagactcacgaa
caggataagatcagcacggaggctcagaacacggacgtgctgcaatctcctctggacagc
acggcgagggatgagctatga
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