Silurus meridionalis (southern catfish): 124376257
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Entry
124376257 CDS
T08004
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04120
Ubiquitin mediated proteolysis
smeo04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124376257 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
124376257 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124376257 (mgrn1b)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124376257 (mgrn1b)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124376257 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-RING_5
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
124376257
NCBI-ProteinID:
XP_046691215
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Position
22:complement(6123687..6136737)
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AA seq
540 aa
AA seq
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MGSVLGRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDGDTPTEEGDKPKSLYGV
EFTFDSDARVAMTIYCQAFEEFSNGMAVYNPKSPAMVSETVHYKRGVSQQFSLPSFKINF
SEWKEEDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSMDHDEHSSSDSVPP
GFEPISLLEALNGLTAMSPGVPSAPLYDEINFSGSLSGDSRQLSSPEHSGESSLQKSKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQAHTMLSSSPAPTEGTGAEDAPDSLSPEDEDR
VNSEGEMMMTDCISERSSLTKAESDPPGLSGSMESLITRSTSCSSQPLLCPMSTLHMEDD
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgggctcggtactcggccgaaggatcgccggggtggaagatatcgatatccaggcgaat
tccgcctacagatttcctcctaaatctgggaactactttgctagtcacttcttcatggga
ggggagaagtttgatacccctcaccctgaaggttaccttttcggtgagaatatggatctc
aatttcctaggcaaccgtcctgtgcagtttccgtacgtgaccccggcaccgcacgagccc
gtgaagactctgagaagcctcgtgaacatcaggaaggactccttgcgcctcgtcagatat
aaagatgatggcgatacacccactgaggaaggagacaaacccaagtctttatacggagtg
gagtttacttttgactcggatgcccgagtagccatgactatctactgccaggcgtttgag
gaattctccaacggaatggccgtttataatcccaagagtcccgctatggtgtctgagacg
gtgcactacaagcgaggagtgagccagcagttctccttaccctccttcaagatcaatttt
tctgaatggaaggaggaagatctaaactttgatctggacagaggtgttttccccatggtc
atccaggccgtagtggacgaaggagacgattgtttgggacacgcacacgtgctgttggct
gccttcgagagacatgttgatggcagcttctcggtgaagcctttaaagcagaaacaaatt
gtggatcgggtcagttatctgctccaggagatttacggcattgaaaataagaacaaccaa
gagacaaagccatcggatgatgagaacagtgacaacagtaacgagtgtgtggtgtgtctg
tcggacctgcgggacacactcatcctgccctgtagacacctgtgtctttgtaactcatgc
gcagatacactgcgctaccaggcgaacaactgccccatctgcagactaccatttcgtgcc
ctgctgcagattagagcagtgaggaaaaagcccggggcgctttctcctgtctctttcagc
cctgttctcgctcagagcatggaccatgacgagcactctagctcagactcggttcctcca
ggctttgaacccatttcccttttggaggctctcaatggcctcacagccatgtcccctggt
gtgccatcagccccgctgtacgacgaaatcaacttttccggcagcctgagtggagacagc
aggcagctgagctctcctgaacactctggagaaagcagccttcaaaagagcaaagttagc
aagtcaccagacagcacgctccgctcaccttcatcacctattcaggaggaagacgaggag
aagctgtcggagatgtctgacgcacaggcccacaccatgctgtcaagcagtccagctccg
actgagggcaccggtgcagaggatgctcctgattccctttctccagaagatgaggacagg
gtgaattctgaaggagagatgatgatgaccgattgcatcagcgagcgcagcagcctgacc
aaagccgagagcgacccacccggtttgtcgggctccatggagagtttgatcactcggagc
acaagctgctctagccagccgctgctctgtcccatgagcactttgcacatggaggacgac
taa
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