Silurus meridionalis (southern catfish): 124376276
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Entry
124376276 CDS
T08004
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
KO
K10752
histone-binding protein RBBP4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03082
ATP-dependent chromatin remodeling
smeo03083
Polycomb repressive complex
smeo04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124376276 (rbbp4)
03083 Polycomb repressive complex
124376276 (rbbp4)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
124376276 (rbbp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124376276 (rbbp4)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
124376276 (rbbp4)
Histone modification proteins
HAT complexes
HATB complex
124376276 (rbbp4)
HDAC complexes
Sin3A-HDAC complex
124376276 (rbbp4)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
124376276 (rbbp4)
PRC2.2
124376276 (rbbp4)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
124376276 (rbbp4)
Heterochromatin formation proteins
Other heterochromatin formation proteins
124376276 (rbbp4)
Chromatin remodeling factors
NuRD complex
124376276 (rbbp4)
NuRF complex
124376276 (rbbp4)
NuRF complex (fruit fly)
124376276 (rbbp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_IFT140_1st
MIOS_WD40
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
124376276
NCBI-ProteinID:
XP_046691238
LinkDB
All DBs
Position
22:12017023..12022842
Genome browser
AA seq
424 aa
AA seq
DB search
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADT
EVQG
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaagaagctgcttttgatgatgcagtggaggagagggtgatcaacgaagag
tacaagatatggaagaaaaacacgccgttcctctacgacctagtgatgacccacgcattg
gagtggcccagtctcaccgcacagtggctccctgatgtcaccaggcctgaggggaaagac
tacagtgtccatcgtctggtccttggcacccacacctctgatgagcaaaaccacctggtc
attgctagcgtccagctgccgaatgatgatgcccaatttgatgcctcacattacgacagt
gagaaaggagagtttggtggcttcggctcagtgagtggcaagattgagattgagatcaag
ataaaccatgaaggagaagtgaaccgggcccgttacatgcctcagaacccctgcatcatt
gctacaaagactccaaccagtgatgtgcttgtctttgattacaccaaacacccttccaaa
ccagacccctctggcgaatgcactcccgacttacgattgagagggcatcagaaagagggc
tatggtctctcttggaaccctaacctaagtggctgcctactcagtgcctccgatgatcat
acaatctgtctatgggacatcagtactgtacccaaggaagggaagatagttgatgctaag
accattttcactggtcacactgctgtggtagaggatgtgtcctggcatcttctgcatgaa
tcgctctttggctcagtggctgatgaccagaagctgatgatttgggatacacgttccaac
aacacatccaagcccagccatgcagtggatgcacacactgcggaggtcaattgtctctca
ttcaatccttacagtgagttcatcctggctactggatctgctgacaagactgttgccttg
tgggatctcaggaaccttaagttgaagctgcattcttttgagtcgcacaaagacgaaata
ttccaggttcagtggtcacctcataacgagaccatcctagcctctagtggaacagacagg
cgtcttaatgtctgggacctcagtaaaattggtgaggagcaatcaccagaagatgcagaa
gatgggcctcctgaattactgttcatccatggtggccatacagcaaagatctccgatttc
tcctggaaccccaatgagccatgggtgatctgttctgtgtctgaggacaacatcatgcaa
gtctggcagatggcagagaacatctacaatgatgaggacccagaaggagcagcagacaca
gaagtccagggataa
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