KEGG   Silurus meridionalis (southern catfish): 124376276
Entry
124376276         CDS       T08004                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03082  ATP-dependent chromatin remodeling
smeo03083  Polycomb repressive complex
smeo04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124376276 (rbbp4)
   03083 Polycomb repressive complex
    124376276 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    124376276 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:smeo03036]
    124376276 (rbbp4)
Chromosome and associated proteins [BR:smeo03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     124376276 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     124376276 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     124376276 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     124376276 (rbbp4)
    PRC2.2
     124376276 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     124376276 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    124376276 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    124376276 (rbbp4)
   NuRF complex
    124376276 (rbbp4)
   NuRF complex (fruit fly)
    124376276 (rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 ANAPC4_WD40 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 124376276
NCBI-ProteinID: XP_046691238
LinkDB
Position
22:12017023..12022842
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADT
EVQG
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaagaagctgcttttgatgatgcagtggaggagagggtgatcaacgaagag
tacaagatatggaagaaaaacacgccgttcctctacgacctagtgatgacccacgcattg
gagtggcccagtctcaccgcacagtggctccctgatgtcaccaggcctgaggggaaagac
tacagtgtccatcgtctggtccttggcacccacacctctgatgagcaaaaccacctggtc
attgctagcgtccagctgccgaatgatgatgcccaatttgatgcctcacattacgacagt
gagaaaggagagtttggtggcttcggctcagtgagtggcaagattgagattgagatcaag
ataaaccatgaaggagaagtgaaccgggcccgttacatgcctcagaacccctgcatcatt
gctacaaagactccaaccagtgatgtgcttgtctttgattacaccaaacacccttccaaa
ccagacccctctggcgaatgcactcccgacttacgattgagagggcatcagaaagagggc
tatggtctctcttggaaccctaacctaagtggctgcctactcagtgcctccgatgatcat
acaatctgtctatgggacatcagtactgtacccaaggaagggaagatagttgatgctaag
accattttcactggtcacactgctgtggtagaggatgtgtcctggcatcttctgcatgaa
tcgctctttggctcagtggctgatgaccagaagctgatgatttgggatacacgttccaac
aacacatccaagcccagccatgcagtggatgcacacactgcggaggtcaattgtctctca
ttcaatccttacagtgagttcatcctggctactggatctgctgacaagactgttgccttg
tgggatctcaggaaccttaagttgaagctgcattcttttgagtcgcacaaagacgaaata
ttccaggttcagtggtcacctcataacgagaccatcctagcctctagtggaacagacagg
cgtcttaatgtctgggacctcagtaaaattggtgaggagcaatcaccagaagatgcagaa
gatgggcctcctgaattactgttcatccatggtggccatacagcaaagatctccgatttc
tcctggaaccccaatgagccatgggtgatctgttctgtgtctgaggacaacatcatgcaa
gtctggcagatggcagagaacatctacaatgatgaggacccagaaggagcagcagacaca
gaagtccagggataa

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