Silurus meridionalis (southern catfish): 124376290
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Entry
124376290 CDS
T08004
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04145
Phagosome
smeo04814
Motor proteins
smeo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124376290
09142 Cell motility
04814 Motor proteins
124376290
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124376290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124376290
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124376290
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
124376290
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
124376290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Dynein_IC2
WD40
WDR55
Beta-prop_EML
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_TEP1_C
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
124376290
NCBI-ProteinID:
XP_046691257
LinkDB
All DBs
Position
22:complement(15075549..15137008)
Genome browser
AA seq
630 aa
AA seq
DB search
MADKSDLKAELERKKQRLAQIREEKKRKEEEKKKKESETQQKAEAAPEDSDLDRKRRETE
ALLQSIGISPEPPLVPTQMSPSKSMSTPSETGSQDSVEGGTVGRYRTLQWDTDPSVLQLQ
ADSELGRRMHRLGASKITQVDFLPKEVVSYSKETQTPVAAHQSEEDEEEDEDNTEPKAGL
ESDQTEDEESKDTKEGHPRELTEEEKQQVLHSEEFVIFFDRSIRVMERALSEDSNIFFDY
SGRDLEDKEGDLQGGSILSFNRLFYDEHWSKHRVITCLDWSPQYPELLVASYNNNEDAPH
EPDGVALVWNMKFKKTTPEYIYHCQSPVVSVGFARFHPNLLVGGTYSGQIVLWDNRSHRR
TPVQRTPLSAAAHTHPVYCVNVVGTQNANNLITVSTDGRMCSWSLDMLSQPQESMELVYN
KSKPVAVTGMAFPAGDVNNFVVGSEEGTVYTASRHGSKAGICEMFEGHQGPVTGISCHSA
MGPVDFSHLFVTSSFDWTVKLWSTKHNKPLYSFEDNADYVYDVMWSPVHPALFAAVDGMG
RLDLWNLNNDTEVPTASVTIEGAPALNRVRWASGGKEVAVGDSEGRLWIYDVGELASAHS
EDWTRFARTLVEIRANRADGEEEGPVELPS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagtgacctaaaagctgagctggagcgcaagaaacagcgtctagctcaa
atcagggaggagaaaaaaagaaaagaggaggagaaaaagaaaaaagagtcggaaacacaa
cagaaggcagaagctgctcctgaggattcagatttggaccgtaagcgcagagagactgag
gcgctgcttcagagtattggaatctcccctgaaccaccattagtcccaacacaaatgtct
ccgtcgaaatcaatgagcacaccgagtgagaccgggagtcaggactcagtggaaggaggc
actgtgggcagatataggaccctgcagtgggacactgacccttctgttctccagctgcag
gctgattccgagctcggccgccggatgcacagactgggggcatccaagataacccaggtg
gatttcttgcccaaagaagtggtttcctactctaaagagacgcaaactcctgtagcagca
caccagtctgaagaggatgaagaggaagatgaggataatacagaacccaaagcaggcttg
gagtccgatcagacggaggatgaagaaagcaaggatacaaaagaaggccacccgcgagag
ctgacggaggaggagaagcagcaggtcctgcactctgaagagtttgtgatcttctttgac
cgcagtattcgtgtgatggagcgagctctttctgaagactctaacatctttttcgattac
agtggccgagacctcgaggataaagaaggagacctgcagggagggtcaattctgtccttt
aatcgtctgttctatgatgagcactggtctaagcatcgggtcatcacctgtctggactgg
tcccctcagtacccagagctgctagtggcctcttataacaacaatgaggatgctcctcat
gagccagatggcgtggctttagtgtggaatatgaaatttaaaaaaaccacgcctgagtac
atctaccactgccagtctcctgtggtgtccgtgggctttgcccgttttcatcctaatctg
ctggtgggtggcacgtactcagggcagatcgtgctctgggacaaccgcagccacaggaga
accccggtccagagaacgccgctctctgcagctgcacatactcatccagtgtactgtgtg
aatgtggtgggaacccagaatgccaacaacttgatcacagtgtctacagatggccggatg
tgctcctggagcctggatatgctctcgcaaccacaggaaagcatggagttagtctataac
aagtcaaaaccagtagcagtgactggaatggcctttcctgctggagatgtcaataatttt
gtggtgggcagtgaagaggggactgtgtacacagcctcaagacatggcagcaaagctggg
atctgtgagatgtttgagggccatcagggaccagtgactggcatcagttgtcacagtgcc
atgggtccagtagacttctcccacctgttcgtcacctcatcatttgactggacagtcaaa
ctctggagcacaaagcacaacaagccgctgtactcctttgaggacaatgctgactatgtg
tacgatgtcatgtggtctccagtgcatcccgcgctcttcgctgctgtggacgggatgggc
cgtctcgatctgtggaacctaaacaatgacactgaggtgcccacagccagtgtgacaatt
gagggcgctcctgctctgaaccgtgtacgttgggcgtcaggaggcaaggaggtggcggta
ggagactcagagggccggctctggatctacgatgtcggagagctggcatcggcacacagc
gaggactggacacgcttcgctcgcacgctggttgagatccgtgccaaccgagctgacggc
gaggaggaaggccctgtggaattgccgtcgtag
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