Silurus meridionalis (southern catfish): 124376298
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Entry
124376298 CDS
T08004
Symbol
hdac5
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 5
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
124376298 (hdac5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124376298 (hdac5)
Enzymes [BR:
smeo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124376298 (hdac5)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124376298 (hdac5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
124376298
NCBI-ProteinID:
XP_046691270
LinkDB
All DBs
Position
22:2170449..2230498
Genome browser
AA seq
1136 aa
AA seq
DB search
MLLKPTVPGLCAMLQTIYETESCFSSDSTSGTNMPSTVVEVKSSLPSGMQSPVAGGVGEQ
GGGGGGGGGGGSGGGGGSGGGGGGSAGGGGGPVDLRTDPRLSALSVMDPALREQQLQHEL
LLLKQQQELQKQLLFAEFQKQHEVLTRQHEVQLQEHLKQQQELLAAKRQQELEQKRKLEQ
QRHEEMEKQRLEQQLIMLRNKEKGKESAIASTEVKLKLQEFLLSKKEPLSGGLNHSFPQK
CWGAHHTSIDQSSPPQSNTPGTPPSYKLPSLLGSYEGKDDFPLRKTASEPNXKVRSRLKQ
KVAERRSSPLLRRKDGTVISTFKKRAIEISVSSMCSSAPGSGPSSPNSSNSAIAENGSSG
SVPNIHAELRSLHQSLNADGAVSPLSLYTSPSLPNISLGLPANAHITAPQKLGGQSEAER
QVQMQGVRQGGVLGKFASGSSVSVCLDSESPSAPNSHSSHNSLLQHVLLLEQARQQSALL
AVPMYGQSPLVTGERASNSMRTVSKLPRHRPLARTQSAPLPQTPQALQHLVIQQQHQHFL
EKQKHYQLNKILSKGVELPRQPPTHPEETEEELTETAEMPEDWGEGPERVREGLSKDSSG
ETTPPSERLVPLKGESTESDLEEDEDEDEAIELKECDEEGDPYRQFTEQQHLQQLNVFQA
SLSITGMPHRPLGRAQSSPITSSLKATPMAELPIKHLFTTGLVYDTLMLKHQCMCGNTHI
HPEHAGRIQSVWSRLQETGLLGRCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLD
SKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSGAVRMAVGCVIELAFKVAAGELKNG
FAVVRPPGHHAEESTAMGFCFFNSVAVTAKLLQQKLGVAKILIVDWDIHHGNGTQQAFYN
DPNVLYISLHRYDDGNFFPGSGAPEEVGVGPGVGFNVNIAWTGGVEPPMGDVEYLTAFRT
VVMPIANEFSPDVVLVSAGFDAVEGHQSPLGGYNVTAKCFGHLTKQLMKLAGGRVVLVLE
GGHDLTAICDASESCVAALLGDELDPLPQSVLQQKPCPKASASLERIIEIQSKHWSSVER
FAPTVSQSLQDAQRREKDEADTVTAMASLTVDTEHTVSSSQSSRAAEEPMEEEPVL
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgaagccgaccgtgccggggctgtgcgccatgttgcagaccatctacgagact
gaatcctgtttctcttcagacagcacgtccggaacgaacatgcccagcacagtggtggag
gtgaagagctcgctgccctcgggcatgcagagtccggtggctggaggtgtcggtgaacag
ggtggaggtggtggaggaggaggaggaggaggtagtggtggtggtggcggcagtggcggt
ggtggaggaggaagcgcaggaggtggaggaggtccggtggacttgcgaacggatcctcgt
ctgagcgctctgagcgtgatggacccggcgctgagggaacagcagctccagcatgaactt
ctcctcctcaagcagcagcaggagctccagaagcagctgctgtttgccgagttccagaag
cagcacgaggtgctgacacgacagcatgaggtccagctgcaggagcacctcaagcagcag
caggagttgttggcagcgaagcgtcagcaggagttggagcagaaaagaaagttggagcag
cagaggcacgaggagatggagaaacagaggctggagcagcagctcataatgctgaggaac
aaggagaagggcaaagagagtgctattgccagcaccgaagtcaaactgaagctccaggag
ttcctgctgagcaaaaaggaacccctgtctggtgggctcaaccattccttcccacagaag
tgctggggcgctcaccatacgtccatagaccagagctccccaccacaaagcaacaccccc
ggcacacccccttcgtacaaactgccctccttattaggatcctatgagggcaaagacgac
ttcccgcttcgcaagacagcatcggagcccaatnctaaggtccgttcacggttaaaacag
aaggtagctgagaggaggagtagtcctctactccgccgtaaagacggcaccgtcatcagc
accttcaaaaagagagccatagagatctcggtgtcctccatgtgcagcagcgcccccggc
tcaggccccagctcccccaacagctccaacagcgccatcgccgaaaatggctccagcggc
tctgtcccaaatatccacgctgagctgcgttccctccaccagtccctaaacgcagacgga
gcggtgagccccctgagcctgtacacgtctccatctctgcccaacatctcattgggtctg
ccggcgaacgcacacatcacggctcctcagaagctcgggggtcagtcagaggccgagcgg
caggtgcagatgcagggggtacgtcagggtggcgtgttggggaagtttgccagtggctcg
tccgtgtccgtgtgtctggactcggaatctccgtcagctcctaacagccacagcagccac
aactcactactgcagcacgtcctcctgctggagcaggcacggcagcagagcgcactgctt
gcagtgcccatgtacggccagtcgccactagttacgggtgaacgggcgtccaacagcatg
cggacggtcagtaaactgccccggcaccgccctctggctcgtacgcagtccgctccgtta
ccacagaccccgcaggcgctgcagcacctcgtcatccagcagcagcaccaacacttcctg
gagaaacagaaacactaccagctcaacaagatcctatctaaaggggtggagcttccgcgt
caaccaccgacccaccccgaggagacggaggaggagcttacagaaactgcagagatgcct
gaggactggggggagggccctgagcgtgtgagggaggggctaagcaaagacagttctggt
gagaccacgcccccttctgagcgcttggtcccgctgaaaggggagagcacggaaagcgat
cttgaggaagacgaggatgaggatgaagccatcgagctgaaggagtgcgatgaagagggc
gacccctacaggcagttcacggagcagcagcacctgcagcagttgaacgtgttccaggca
tctttgtccatcactggaatgcctcacagacccctgggaagggctcagtcgtccccaatc
acctccagtcttaaagccacgcccatggcagaattacccatcaagcacctcttcactaca
ggtctggtgtacgacacgctcatgctgaagcaccagtgcatgtgcggaaacacacacatc
caccccgagcacgccggacgaatccagagcgtttggtccaggctgcaggagacgggcctg
ctgggtcgttgtgagaggatccggggcaggaaagcgaccctggatgagatccagacggtg
cactcggagtatcacacactgctgtacggcacgagccccctcaaccgccagaaactcgac
agcaaaaagctcttaggtccgatcagtcagaagatgtacgctgtccttccgtgtggaggg
atcggggtggacagcgatacggtgtggaacgagatgcactcctcgggagccgtccgcatg
gccgtgggctgcgtcatcgagctcgcttttaaggtagcagccggagaactgaagaacgga
ttcgctgttgtccgtcccccgggtcaccacgcagaggagtccacagccatgggtttctgc
tttttcaactctgtagccgtcacagccaaactgctccagcagaaactgggcgtggccaaa
atcctcatcgtagactgggacattcaccatggcaacgggacccagcaggctttttacaat
gaccccaacgtgctgtacatctccctgcatcgctacgacgacgggaacttcttccctgga
agcggtgcccctgaagaggtgggagtgggtcctggtgtgggctttaatgtgaacatagcg
tggacgggtggagtcgaacctcctatgggtgatgtggagtatctaacagccttcaggacg
gtggtgatgcccatcgctaacgagttctccccggatgtggtgctggtgtcggccgggttc
gacgccgttgagggtcaccagtctccgctcggaggctacaacgtcaccgccaaatgtttt
ggtcacctgaccaagcagttgatgaagctggcaggcggccgcgtggtcctagtgctggag
gggggtcacgacctcacagccatctgtgacgcctccgagtcgtgtgtcgccgcgctgctt
ggagatgagctggacccgctgcctcagtctgtgcttcagcagaaaccgtgtccaaaagca
tcagcgtctctcgagagaatcattgagatccagagtaaacactggtcctcagtagaaaga
ttcgctcccacggtgtctcagtctctgcaggacgctcagcggcgggagaaggacgaagca
gacacagtgacggccatggcgtctctgaccgtggacacggagcacacggtgtcctcctca
cagagcagcagggctgctgaggagccgatggaggaggagcccgtgctgtag
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