Silurus meridionalis (southern catfish): 124376412
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Entry
124376412 CDS
T08004
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124376412 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124376412 (xab2)
03041 Spliceosome [BR:
smeo03041
]
124376412 (xab2)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124376412 (xab2)
Spliceosome [BR:
smeo03041
]
Complex B
Other components
Prp19-related factors
124376412 (xab2)
Complex C
124376412 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
TPR_1
Tcf25
PPR
LTN1_E3_ligase_6th
NRDE-2
Motif
Other DBs
NCBI-GeneID:
124376412
NCBI-ProteinID:
XP_046691433
LinkDB
All DBs
Position
22:4199815..4211790
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AA seq
847 aa
AA seq
DB search
MPVFNGKQDVVFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERSLKELP
GSYKLWYNYLRERRKQIKGKCVTDPAYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQCK
ITRSRRTFDRALRALPVTQHPRVWPLYLKFARKLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDEGFVSKEGKSNYQLWHELCDLISKNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSMADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEDDDIDLELRLARFEELITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTIDAVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERSTQAVEPQERHLMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYCFCSQMCDPRMTAHFWQTWKDFEVRHGNEDTIREMLR
IKRSVQATYNTQVNFMSAQMLKATTSATVSDLAPGQIGMDDMKMLEQKAQQLAAEAEQDK
PKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEEEGDGDEEPDEVQLEQKSVPTAV
FGGLKDD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtctttaacggaaaacaggacgtcgtgtttgaggaagatgatcttccctacgag
gaagaaatcatcaggaacccgtactcagtgaagtgctggatgcgttacatcgagcacaaa
caaaacgccccgaagtctgtgctgaacatgatttacgagcgatcgcttaaggaactcccg
ggcagttacaagttgtggtacaactacctgagagagagaaggaagcagatcaaagggaaa
tgtgtcacagatccggcgtacgaggaggtcaacaactgccacgagagagcgctggtgttc
atgcacaagatgccgaggatttggctggattactgccagttcatagtgtctcagtgcaaa
atcacaagaagccggcgcacgtttgaccgagcgctcagagctctgccggtcacccagcac
ccccgcgtctggcccctgtacctcaagtttgcccggaagttacccctgcctgagaccgcc
atccgggtttatcgccgatatctcaagctgtctccagagaacgcagaggagtacatcgat
tacctgcgctccgtaggacgtctggacgaggcagcggtccggctcgccgctgtggtgaac
gacgaaggcttcgtctcgaaagagggaaaatcaaactatcagctctggcacgaactgtgc
gatctcatctccaagaacccggacaaggtgacctcgctgaacgtcggcgccatcatccgc
ggtggtctcactcgcttcacggaccagctgggcaagctgtggtgctccatggccgattac
tacatccgcagcggccacttcgagaaggctcgggatgtgtatgaagaggcgattcagacc
gtcgtcaccgtacgagacttcactcaggtgttcgacagctacgcccagttcgaagagagc
atgatcgctgccaagatggaaaccacgtccgagatgggaaaagacgaagacgatgacatc
gatctggagctgcgcttggcccggttcgaggagctgatcacgcgccggccgcttttactc
aacagcgtgctcctgcgccagaacccccacaacgtccacgagtggcacaagagggtcaaa
ctctacgaaggcaatcctcgacagatcataaacacctacactgaagcggtgcagacaata
gatgctgtaaaagctaccgggaaacctcactcgctctgggtctcgttcgcccggttctac
gaggacaacgaacaactggatgatgccagaacgatcttcgagaaggccaccaaggtgaac
tacaagcaggtggacgacctggcagcagtgtggtgcgaatacggagagatggagttacgg
cacgagaactacgaccaggcgttacgtatactcaggaaagccacagcgatcccctcgaga
aaagcagagtactttgattcgtccgagccagtgcagaatcgagtgtataaatccctgaag
gtctggtccatgctggcagatttggaggagagcctcggcaccttccagtcaacgaaatcg
gtgtacgatcgcatcatcgacctccgcatcgccacgccgcagatcatcatcaactacgcc
atgttcctcgaggagcacaactactttgaggaaagctttaaagcgtacgaacgtggcatc
gcgctcttcaggtggcccaacgtgtacgacatctggaacacctacctcaccaagttcatc
gatcgctacggaggcaagaagctggagagagcgcgagacctgttcgagcaggcgctggac
gggtgtccacccaagtttgcgaaaaccatctacctgctgtatgctaagctggaggaggag
tatggactggcccgccatgccatggctgtgtacgagagatcgacgcaggctgtggagccc
caagagcgccacctcatgttcaacatctacatcaagagagctgcggagatctacggagtc
actcacaccagagcaatctatcagaaagccatcgaggttctcccagatgaacatgcccgg
gacatgtgcctgcgtttcgctgacatggagagcaaactgggcgagatcgatcgtgcaaga
gctatttattgcttctgctcccagatgtgtgatcccaggatgactgctcatttctggcag
acgtggaaagatttcgaggtccggcacgggaacgaggacacaatccgcgagatgctgcga
ataaagagaagcgtccaggcaacctacaacacacaggtcaactttatgtccgcacagatg
ctgaaagcaaccacaagcgctactgtgtcggaccttgctccaggccagattggcatggac
gacatgaagatgttggagcagaaagcgcagcagctggctgcagaagctgaacaggacaaa
cccaaacctaaagacaagatcctttttgtcaggagcgacacctctcgcagcgaactggcc
gagctagccaagcaggctaacccagacgagatcgacatcgacgacgacgaggaggaggga
gacggagacgaagaaccagacgaggtgcaactcgagcagaaaagcgtccccacagcagtg
ttcggaggactgaaggacgactga
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