Silurus meridionalis (southern catfish): 124376417
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Entry
124376417 CDS
T08004
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124376417 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124376417 (cpsf4)
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124376417 (cpsf4)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124376417 (cpsf4)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124376417 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
124376417
NCBI-ProteinID:
XP_046691452
LinkDB
All DBs
Position
22:complement(8828390..8831506)
Genome browser
AA seq
270 aa
AA seq
DB search
MQEIIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRSACIKGGGMCPFRH
ISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPES
KIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGTNEQP
PLPQQNQIQQKQNAQNQNRSSLSLIQLTSNNNMVNTHYQKPMLGSSQSQNNTGGPRGPRP
LDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaataatcgccaacgttgatcatttaaaattcgacctggagatcgctgtcgag
cagcagttaggggcgcaaccgctgccgtttccaggaatggacaagtcaggagcagctgtg
tgtgagtttttcatgagatctgcttgtataaaaggaggtggcatgtgtccttttcggcac
atcagtggagaaaagacggtggtttgtaaacactggcttcgaggattatgcaagaaagga
gatcagtgtgaattcctgcacgagtacgacatgacgaagatgcccgaatgctatttctac
tccaaatttggggaatgcagtaataaagaatgtcctttcttgcacattgacccggaatct
aagattaaagactgtccgtggtatgatcgaggattttgcaagcacggtccggattgccga
cacagacacacaaggagggtcatctgtgtaaattatctagtaggcttctgtcccgagggc
aagtcgtgcaagtttatgcacccacgctttgagctaccaatggggacaaatgaacagcca
cctctgcctcagcaaaaccagatccagcaaaagcaaaatgcacagaaccaaaacagatca
tcgttgtcactgatccagttaaccagcaacaacaacatggtcaatacacactatcaaaaa
cccatgctcggatcttcacagtctcagaacaacacagggggcccaagaggccctcggcca
ctggaccaggtcacatgttacaagtgtggagaaaagggacattatgcaaacaaatgcaca
aaaggacacctggcattcctaagtggacaataa
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