Silurus meridionalis (southern catfish): 124376698
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Entry
124376698 CDS
T08004
Symbol
taf4b
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124376698 (taf4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124376698 (taf4b)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124376698 (taf4b)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124376698 (taf4b)
Coactivators
SAGA/TFTC/STAGA complex
124376698 (taf4b)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124376698 (taf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
ISG65-75
Motif
Other DBs
NCBI-GeneID:
124376698
NCBI-ProteinID:
XP_046691868
LinkDB
All DBs
Position
23:12135407..12148449
Genome browser
AA seq
823 aa
AA seq
DB search
MAESERIIDDSAEKVDAIPETGDTPATATACARVSYKHNALDITNEEKKTQASESSETLK
KDPAEFQAPSLSMHSTPSTPVSSTVTSASMPPTPKVIVSSAPIRSATPLVVGARVVTGAS
TAAGASGQSSASHPGGITVMSNQVRPPAVAQAPLRASIVALPRASILQQNATVPRSSHTT
SLQLPANFQIPQGMVLIRSDSGQLMLVSQQALAQAQAQGLVPKSSNVPSAVRPQAPQAAA
PSIIRVSLPSSSTTVATIVKPTSSAPKAVLKPSSTTGTALIKSTSIGNTIIKPPSGLGTG
LKPSSITGPTVIKSTSVQKPSISTSTGTISQRTITGTNVTSASIVKSINKTSLTSVNQVN
CPVGSGPRNICPNIPIKTSSSSKVSTQVPVTAETLENVKKCKNFLITLMKLASSGTRSPD
MAQNVRALVKDLLDGRLEAEEFTEKLYIELKSSPQPYLVPFLKRSLPAVRQLTPNSQLFI
QQCEQPKSSTSFTICNSTQKLRLPPSTTITQPLRGSAPARPPQMVLQQAKGVIVEQHVTS
SPHVVKPVQSHTQPKPPVIQTNTQLAAFRSQYPLQDSTSGSFRDDDDINDVASMAGVNLN
EENARILASSSELVGTVVHSCRDELFLQTTALQQKVLHIGNSLGVTEVNTDVLGLLSHAT
QERLRDLLEKLSAIVQHHYVSYRDDWRNIQISDARSQLKFLEQLEKVKKQKREEEERETL
LRIAKSRSSSEDPEQLRLKQRAKEMQQLELAQMEHRDANLAALAALGPRKRKPLETSGAG
TNQVLGFRAQRTAQRVTVRDLIFCMEQDRALRHSLTLYHAFLR
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagcgaaagaataatcgacgattcggcagaaaaagtggacgcaattcctgaa
acaggagacactcctgcaacagcaacagcgtgcgctcgggtgtcttataaacacaatgcg
ctcgatattactaacgaagaaaaaaaaacccaggcatcagagtcatctgagacacttaaa
aaagatcctgctgaatttcaagctccttctttgagcatgcattccactccatctacacct
gtgagctccactgtaacatctgcttccatgcctccaacaccaaaggtcatagtgagctct
gcgcctatcagatctgccacaccgctagtggtgggggcgagagtggtgacaggggctagt
acagcagctggggccagtggacagagctcagcttcacaccctggaggaattactgtgatg
tctaaccaggtcagacctccagcagtggcccaagctccactccgggcatcgattgtggct
ttaccgagggcatccattttgcagcagaatgcaacagttccaaggagctctcacacaacg
tctctccagctgccggccaacttccagattccacaaggtatggttttaattcgcagcgac
agtgggcagttgatgttggtttcccagcaggctttagctcaagcacaggcacagggctta
gtgcccaaatcatcgaatgtcccttcagctgtaagaccacaggccccccaggcagcagca
ccatctattatcagagtctctctcccgtcttcatctacaacagtagccaccatagtaaaa
cccacctcctcggcaccaaaggctgttcttaagcccagctccacaacaggcactgcgtta
atcaaatccaccagtataggaaacactattattaaacctccctctgggttagggactggc
cttaagccaagctctattacagggcccactgtcattaaatctacctctgttcagaaaccg
tcaataagcacctcaacaggtaccattagccaaaggaccattactggcactaatgtcacc
tcggcatccatagtgaagtctattaacaagacatcacttacttcagttaatcaagtaaac
tgcccagttggtagtggccctcgaaatatctgcccgaatattcccatcaaaaccagcagc
agtagcaaagtctccacccaggtgcctgtcactgctgagacactggagaatgtaaagaag
tgtaaaaacttcctaatcactctaatgaagctagcatcaagtgggacccgatcacctgac
atggcacagaacgttcgagctctggtcaaagacctgctggatggacgactggaagctgag
gagttcactgaaaaactttacatagagctgaaatcatccccacaaccatacctggtgccc
tttcttaaaaggagccttcctgctgtgcgtcagctcaccccaaactctcagctctttatc
cagcagtgtgagcagcccaaatcttccacctcgttcacaatctgcaacagcacccagaaa
cttcgtcttcctccctctaccaccatcactcagcctcttcgaggcagtgcacctgccaga
cccccacaaatggtactccagcaagccaaaggtgtgattgtggagcaacatgtaacctcc
tcaccccatgttgtgaagccagtgcagagccacacacagcccaagccgccagttattcag
acgaacacacagttagcagcttttaggagccagtatcctctccaggacagcacctcaggc
tcattccgtgatgatgatgacataaatgatgtggcttccatggccggtgtgaacttgaat
gaggagaatgctcgcattttggcgtccagttcagagctggtgggaacagtggtgcactct
tgcagagacgagctcttcctgcaaaccacagcactgcaacagaaagtgcttcacattggt
aattctctcggtgttacagaggtgaatacagatgtgcttgggttgctctctcatgccaca
caggaaagacttcgagatctgctggaaaagctctctgctattgtacaacatcattatgtt
tcttacagggatgactggcgaaacattcagatcagtgacgcacgctcccaactaaagttc
ctggagcagctggaaaaagtgaagaaacaaaagagagaagaggaggagagggagaccctg
ttacgcatcgctaagagtcgctcgagcagtgaggaccccgagcagcttcgactcaaacag
agagcaaaagagatgcagcagctggagctagctcagatggagcacagagatgctaacctg
gcagcactggcggctctggggcctcggaaaaggaaacctctggagacttccggcgctgga
actaaccaggtcctgggtttccgcgcacagagaaccgctcaacgtgtgactgtccgagat
ctgatattctgcatggaacaggatcgagccctcagacattcccttacactctaccacgct
ttcttacgatag
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