Silurus meridionalis (southern catfish): 124377013
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Entry
124377013 CDS
T08004
Symbol
tprb
Name
(RefSeq) LOW QUALITY PROTEIN: translocated promoter region b, nuclear basket protein
KO
K09291
nucleoprotein TPR
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124377013 (tprb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124377013 (tprb)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124377013 (tprb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
124377013
NCBI-ProteinID:
XP_046692222
LinkDB
All DBs
Position
23:6560121..6580190
Genome browser
AA seq
2357 aa
AA seq
DB search
MAAVLQQILERGELSKLSKAVQGKLEKYLSEQRSDADYYKAQYEQLRVDSEQQYSDLERC
YTESRDQCVSVTKDHQKLQEEFTSLDEELKSLREKTKEHESSYSKLESEQKELSKIKDTL
EAEKRDLVRTLERTAQELEGQSEDLKRLGDRLVEVNATNLQLKMKIDELEALEVSIKYKE
KRMGQEKDLLEGQVNWLSKELKMKSEELLSLSREKGSEILELKCSLNNKDDECTRLQDQL
LSLKSSNENLQKQTEDLISKLKEAKEQQASSEEKFRNELNANIKLSNLYKGAAADAEAKS
EELNQAVEELHKLLKEAGEAHKAMEMKLAEAESCNQKEVAELKERIGILEKELDNANDLL
SDTKRRAGHTSTSVLPDEQLSTMSPTAAAIFKIRPGMKLTEIYSAYVESQEQLQLEKLEN
KRVNKYLDDIVQEVEAKAPMLKRQREELERSQKSVASLSAKLEHAMQEVQRLQKEADEAN
KHSSMLERDNQRFEVQLSDMARQVRVLLIELEEARGNHVLHDEEDVCSADVSSTSEVISQ
HLVSFRSVEELQQQNQRLLVALRELGDAQERGEMEAEGTKQAELQNSLEKAQLELEQLRE
QRTHQMQLVESIVRQRDMYRVLLAQATGVNFPQQGASSDEFSLTSTPRRSPAATPTTGTP
TGLVTAAIQDSTETVEAKAALKQLQEVFGAFKKEKAEREKDLTEHCEKLQEQVSERRSQN
ATVSTQLEFASKRYEMLQDNVEGYRKEIASLREKTQKQEAAGQKSEQMVHMLTQDLRAAN
EKLSILESQVESLRKERDVLKTVESSLIQEKESILAQQRNQNLLLTNLKSIQATLERSET
ETRHRLTAQVEKQEREISQLQKKLEQEVEQRHTLERNHDKQLLDAKKQVEVQCALHQRTR
EQLNATQQELSGLQQQMNTREGRLSSPSTHTSLTGPPADKEDAEELRKHLNEAKSSSQDL
AERLESATTSLDQYRAMCLSLEEALEKEKQVTEQVKASVEGQVSEAHERLQQLEKKLHEA
EKAKNEIQEEKQKAVAAIEQQVSELQQNLSSLQSEHQEALQKAALVEAQVQQAVLDSQEQ
ARFAAEAQDKYEQEMLLHAADVEALQAAKAQGQHASQLRLQLEEKLQTVSAQLFEARVSW
EEQEKIFKEEHTKMESRCQDLQKQNELLHEQIQALSGKMVSQLQQAAGDSSLNVSLTEEG
KSQEQLLEILSFVRREKEISESRFEVAQGECLRHRLRVEHLERELKEVQDSLNAERERMQ
VTAKTLSQHDELMKKTETMNVLVETNKMLRDEKERLEQELQQTQAKVSKLHSDILPMQES
NAELSEKSGMLQAEKKLLEEEIKRWKARTQFLVSQQKDTDPEEYKRLHSEKEAHLKRIQQ
LTEETGRLKAESTRTSSSVTTLQSQVQNLRENLGKLTVERDGLKKELEAKTLDIQEKLKT
ITQVKKLGRRYKTQYEELKVEHDKMVAVAASAPVQDQEAQQASAQELQGLKDSLSQSEAK
TQELESQLETLNKTAGERETEARTAQDQVSHLQGELTRLRQELVEKSAQEDRLRQQLVEK
EDRTRKAILGAKQKIHHLVEVKSQLVKENEELKQQREEFKQQREELEVRLNALRSQYEGR
LSRQEKELRELRDLREQQERHVEQRDEPVEQGTSKVQEPQRTTEQRQISLKSTPVAERGS
ASSSEPPTANIKPTPLVATPSKPQAIPGNKPTPRASIKPMITPAAVPTPTPTATVMPTTQ
QESQEALSSDAPLEHVSVFGNTTGSVRSTSPNIQTTLAQPMLSVQQSQTTAFVQPTQQQS
VPPTEPLSQEPTSMMMEATPSTSQMERPSTSTSVFGTVSATPGSTITKRPREEEMDTVAV
EPELQEEPTEPPISKKLRVQKVELEMEMLTEDSTEAESVVPGGSQEAADAVEELENYTNL
EEEETVASQSVPVEFLLSQVSDSHSQEEPDESVIIIESDSESEEEQEEETDEEEQDYEEE
EDDEDDEDDDEGGIEAEGEDSNEGSGNEDPTEGGYEGDNTEGPDATDPGTETEESLCATD
STQCVSNPAPLAFSPEPITSSVPRPPPSPRRLQQSLPSRLSILAPPMQELAPPSQVQRIP
ARRQPVGRGLQLTSGVSGSAQQQQHFYEEDDRMVPSTPTLPASHRTDCFSEALHSSQVAG
VLRFGFGLSDDVPQTSSSNADLDQLASQGGLGMYDSPMFLPTHEESAGGRSVPTTPLQVA
APVTAFLDTHSSEVTDHASQSVPTVSTSTPSVRCDWAQPAEDRDVLLEAGEDGSIAEVAL
ESSSQPEAEEPDQPSDEASLPSTSQEPSSSSADTSSTQASKVRTGSVRQWTRGRATRGFV
KRGTATFAQSSHKHSHL
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgctgcagcagattttggagcgaggagagttatccaaactatcaaaggca
gtgcaggggaagctggagaaatatctttcggagcagcggagtgatgctgactactataaa
gcccagtatgagcagcttcgtgtggacagcgagcaacagtactcggacctggagaggtgc
tacacggagagccgggatcagtgtgtgtctgtaacgaaagatcatcaaaaactccaggag
gagttcacatcgctcgacgaagagctgaaatctctccgtgagaaaacaaaggaacacgaa
tcctcgtactcaaagctggagtcggagcagaaggagctttctaaaataaaggacaccctg
gaggccgagaagcgagacctggtgcgcacactggagagaacggcacaggaactcgagggc
cagagcgaggatctgaagcggctcggtgacaggctggtggaggtcaatgccacaaatctg
cagctgaagatgaaaatcgatgagctggaggctctggaggtctcgatcaagtacaaagag
aaacggatggggcaggagaaggatctgctcgaagggcaggtgaactggctaagcaaggag
ctgaagatgaaaagtgaagagcttctctctctgtcacgggagaaaggcagcgagattctg
gagcttaagtgcagcctgaacaacaaagacgatgagtgtaccagattacaggaccagctg
ctcagtctgaaatcctccaacgagaaccttcagaagcaaaccgaggaccttatcagcaaa
ctgaaagaggccaaagaacagcaagcaagttcagaggagaaattccgaaacgagcttaac
gccaacatcaagctgtcgaacctgtacaagggagcagcagcagatgcagaggcaaagagt
gaagagctgaaccaggccgtagaagagctgcataagctgctaaaggaggcaggggaagct
cataaagctatggagatgaagctggctgaggcagagagctgcaaccagaaggaagtggcc
gagctgaaggagcgcatcggcatcctggagaaagagctggacaacgccaacgatcttctg
tcagacacgaagcgccgagccggccacacgtccacatcagttctcccggacgaacagctg
agcacaatgtctcccaccgcagcagccatcttcaaaatcaggccaggcatgaagctcaca
gagatctacagcgcctacgtggagtctcaagagcaactgcaactggagaaactggagaac
aagcgtgtgaacaagtacctggatgacattgtgcaggaggttgaggctaaagcacccatg
ctgaagaggcagagggaggagctggagcgctcccagaaatccgtggccagtttgtctgcc
aagttggagcatgctatgcaggaagtacagcgcttgcagaaagaggcagatgaagccaac
aagcactcctccatgctggagagagacaatcagaggtttgaggtgcagctgagcgacatg
gctcgccaggttcgggtgttgctgatcgagctggaggaggcacgtgggaatcacgtgttg
catgacgaggaggacgtgtgttccgcagacgtgagcagtacgtccgaggtgatatcgcag
cacctggtctcgttccgcagcgtggaggaactgcagcagcagaaccagcggctgctggtg
gccctgcgtgagctcggagatgcccaggagcgaggagagatggaggctgagggcaccaaa
caggcagagctccagaacagtttggagaaggcccagcttgagctggagcagcttcgtgaa
cagcgtacacaccagatgcagctggttgaatccattgtgcgccagcgagacatgtaccga
gtcctgctcgcccaggccacaggggtcaacttccctcagcaaggtgcttcctcggacgag
ttctctctcacctccacgccccgtcggtcccctgcggccacgcccaccacgggcacaccc
accgggcttgtcaccgctgcaatccaagactccacggagacggtggaggccaaggccgca
ctgaaacagctccaagaggtgttcggggcttttaagaaagagaaggcagaacgtgagaag
gatctgacggagcattgcgagaagctgcaagagcaggtgtccgaacggagatcccagaac
gccacggtttccactcagctggagtttgcttctaagcgatatgagatgctgcaggataac
gtggaaggttaccgcaaggagatcgcttctctgagagagaaaacccagaagcaggaagcc
gctggtcagaagagcgagcagatggtgcacatgctcacacaagacctgcgtgccgcgaat
gagaaactgtccatcctcgaatcgcaagtggagagcctgcgcaaggagcgagatgtgctg
aagacggtggagtcgagtctgatccaggagaaggagtcgatcctcgcccagcagaggaac
cagaacctcctgctcaccaatctcaaatccatccaggccacattggagcgctcggagacc
gaaaccaggcaccggctcacggcacaggtggagaagcaagagcgagagatttcccaactg
cagaagaaactggagcaggaggtggagcagaggcatacgctggagcgcaatcatgataag
cagcttctggacgcgaagaagcaggtggaggtgcagtgcgcattgcaccaaaggaccaga
gagcagctgaacgccacacagcaggagctcagcggtctccagcagcagatgaacaccaga
gagggacggctttcctcacccagcactcacacaagcctcactgggccgccggctgacaaa
gaggacgcagaggaactgcgcaagcatctgaatgaagcgaagagcagtagccaggacctg
gcggagagactcgagagcgccaccacatctctcgatcagtacagagccatgtgcctcagt
ctggaggaggccctggagaaagagaaacaggtaaccgaacaagtgaaggcgtcggttgaa
ggccaggtttcggaggctcacgagcggcttcagcagctggaaaagaagcttcacgaagcc
gagaaggccaagaatgaaatccaggaagagaagcagaaggctgtggcagccattgagcag
caggtgagcgagctgcagcagaacctgagcagcctgcagtccgagcaccaggaagctttg
cagaaagctgctctggtggaagctcaagtgcagcaggccgtgctggacagccaggagcag
gctcgtttcgctgctgaggcccaggacaagtacgagcaagagatgttactccatgcagcc
gacgtggaagccctgcaagcagccaaagctcagggccagcatgcctcacagcttcgcctg
cagctggaagagaagctccagacagtcagcgcacagctgtttgaggcccgagtgtcctgg
gaggagcaggagaagattttcaaagaggagcacactaagatggagtcacgctgtcaagac
ttgcagaagcagaacgagctcttacatgagcagatccaggccctgagtgggaagatggtg
agccagctccagcaggcagccggcgatagctcactgaacgtttccctcaccgaggagggg
aagtctcaggagcagctccttgagatcctcagcttcgttcgtcgggagaaagagatatcg
gagtcacgtttcgaggtggctcagggagagtgtctgaggcaccgactgagagtggagcac
ctggagcgggagctgaaggaggtccaggactcgctcaatgctgaaagagaaaggatgcag
gtgactgcaaagaccttgtcccaacacgatgagctgatgaagaagaccgagaccatgaat
gtgctggtggagaccaataagatgctgcgagacgagaaggaaagactggagcaggagcta
cagcagactcaagccaaagttagcaagctgcattcagacatcttgcccatgcaggagtcc
aacgccgagctgagcgaaaagagcggcatgctgcaggctgagaaaaaactcctggaagag
gaaatcaagcgctggaaagcacgtactcagttcctggtgagtcagcagaaggacacagac
ccagaagagtataaacggctgcactcggagaaagaagcccatctcaagcgcatccagcag
cttactgaggaaaccggtcggctcaaggcagagtcaaccaggactagcagttcagtcacc
acattgcagtcccaggtgcagaacctgcgggagaatcttggcaagttgacagtagaaagg
gacggtctgaagaaagagctagaggccaagaccctggacatccaagagaagctcaagacc
atcactcaggtcaagaagcttggacgccgttataaaacccaatatgaggagctaaaagtt
gagcatgacaagatggtggcagttgctgcctcggctccagtccaagaccaggaagctcag
caggcctcggctcaggagctacagggcctcaaagattccctcagccaatcagaggccaag
actcaggagctggagagccagctggaaactctaaacaaaacagcaggggagcgtgaaaca
gaagcacgcacagcgcaggaccaggtatcccacctgcagggggagctaacacgcttacgg
caggagctggtggagaagtcggcgcaggaagaccgactccggcagcagctggtcgagaag
gaggatcggaccagaaaagcgattctgggggcaaaacagaaaatccaccaccttgtggag
gtgaagagtcagttggtgaaggagaacgaggagctgaagcagcagcgcgaggagtttaag
cagcagcgcgaggagctggaggtgcgtctgaatgctctgcgctcgcagtacgagggccgc
ctgagccgtcaggagaaggagcttcgggagctacgcgacctgcgagagcagcaggaaaga
cacgtggagcagagagatgagccagtggagcaaggcaccagcaaggtgcaggagccacag
aggaccactgagcagaggcagatctctctgaaatccacaccagtggctgaaaggggcagt
gcgagcagctcagagcctcccacagccaatataaaacccactcccctggtggccaccccc
agcaaaccccaagccattcctgggaacaaacccaccccgagggccagtataaaaccaatg
atcactccagctgcagtgcccacacccactcctactgcaacagtgatgcccaccacccag
caggagagccaagaggccctgtcatcagacgctcctctggagcatgtgtccgtgtttgga
aacaccactggctctgtgcgctccaccagccccaacattcagaccactctggctcagccc
atgctgagtgtccagcagagccaaacaactgcgttcgtccagcccacgcagcaacagagt
gtaccccccacagagcctttaagtcaggagcccacctccatgatgatggaggctacacct
agcacgtcacagatggaaagaccttccacatccacatctgtgtttggaacagtttcagca
acgcctggaagcaccataaccaagcggcctcgagaagaggaaatggacactgttgcagtg
gagcccgagcttcaagaggagcccactgagccccccatctccaaaaagctgcgtgtgcag
aaagtggagcttgagatggagatgctcactgaggacagcaccgaagcggagagtgttgta
ccaggaggaagccaggaagcagctgatgctgttgaggagctggaaaactataccaacctg
gaagaggaggagactgtggcatctcagtctgttcctgtggagtttcttctctcccaagtg
tccgactcgcacagtcaggaagaaccggacgaatcggtcataatcatcgagagcgattcg
gagagcgaggaagaacaagaggaggagacggatgaagaggagcaggattatgaggaggag
gaggatgacgaggatgatgaagacgatgatgaaggaggaatcgaggcggaaggagaagac
agcaacgaggggagcggaaatgaagaccccactgagggaggatatgagggtgacaataca
gagggtcctgatgccacagaccccggtactgaaactgaggaaagtctttgtgcgacagac
tccacccagtgtgtgtcaaatcctgcccccttggcgttctcccctgaaccaatcaccagc
tccgtgccgcgtcctccaccatcaccacggagactccagcagtctctgccttctcgtctc
agcattctggctccacccatgcaagagctagctccaccctctcaagtccagcgcatccct
gcacgtcggcagccagtcggacgaggacttcagctgacctccggggtgtccggtagtgca
cagcaacagcagcacttttatgaggaggatgaccgtatggtccccagcacccccacactg
cctgcctcccatcgtacagactgtttcagcgaagctctccattcttcgcaggtcgcaggt
gtgctgcggttcggctttggcctctccgatgacgtcccacagaccagttcttccaacgca
gatctggaccagctggcttcacaaggagggcttggcatgtacgacagtcccatgttcctg
cccactcatgaggaatccgctgggggacgtagcgtacccaccaccccactacaggtggct
gctccagtcactgcattcttggacacacactcctccgaggtgaccgaccacgcctcccag
tccgtcccaacagtgagcacgtctacaccgagtgtgcgttgtgactgggcccagcccgcc
gaagaccgagacgtcttgctcgaggcaggggaggacggcagcattgcagaggtagctctg
gagtcttcttcacagcctgaggctgaggagccagatcagccttcagatgaggccagtctc
ccctctaccagccaggagccttcgtccagctccgcagacacaagcagcacacaggcttct
aaagtcaggactggttcagtcaggcagtggacacgaggacgggccaccagaggtttcgtt
aagagaggtacagctactttcgcccaatcctcgcacaaacacagtcatctataa
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integrated database retrieval system
