Silurus meridionalis (southern catfish): 124377156
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Entry
124377156 CDS
T08004
Symbol
pdgfra
Name
(RefSeq) LOW QUALITY PROTEIN: platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04010
MAPK signaling pathway
smeo04020
Calcium signaling pathway
smeo04144
Endocytosis
smeo04510
Focal adhesion
smeo04540
Gap junction
smeo04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124377156 (pdgfra)
04020 Calcium signaling pathway
124377156 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124377156 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
124377156 (pdgfra)
04540 Gap junction
124377156 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
124377156 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smeo01001
]
124377156 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
smeo04090
]
124377156 (pdgfra)
Enzymes [BR:
smeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
124377156 (pdgfra)
Protein kinases [BR:
smeo01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
124377156 (pdgfra)
CD molecules [BR:
smeo04090
]
Proteins
124377156 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
Kinase-like
Motif
Other DBs
NCBI-GeneID:
124377156
NCBI-ProteinID:
XP_046692472
LinkDB
All DBs
Position
23:9153602..9177007
Genome browser
AA seq
1408 aa
AA seq
DB search
MWEEPLPMNTHVLPGYYTSTLLIDDAAAHHTGEYSCIYEDEEQIYHEFIASIYIFVPDPE
VPFVPGDSIKVSKYAIPCRVTDPQSSVILRSLPSEEELSMXYEPRFGFIGIFSPGQHVCE
TTVNGETVRSVVYTVPDDPFYDEPFMINLMENEFTVKLMASQKDIKEGEAFNLTCTVPPG
ALYVQQWLHLKKEAVGAIQKKETYPDKVLYILSIPHASTNDTGFYECSVTDQSSGKMRSS
EVTVVVHEASFITLDHSGIGAVETITLLEDSEFTIYINSDAVPKVTWFQDGNVLNNNYIT
TKTTLLEDKRYESVLVLRHPIEEDSGTYKIVASVGSQSKEFSFKILVKDGETQIIQSTMA
PVIWPRKETMEVFLNSMFRLTCRGQAEVVWEGPVSFDKQNLDDKNGLFVSTVTVDSATAM
HTGEYTCFYKNGNQTEESSIYIYVPDPDMPFVPPLLPFGHHVLKSLEEMEVPCRVSDPST
HVTLFHIETRQSVPANYDSKRGFLGNFTPGTYVCHAVVNGELQESEEYIVHGWTGGSGLH
VDLKIEKKALLVGETITVNCIAKGSDLLDQQWKYPGKGADRAKTTLKENKKDQEIYYTLT
VSDARTKDSGNYACSITDIMSNESQTKEISIIVYEMEFVSLSPMFAPVETAKLNDVREFR
LDIEALPAPKVTWLKDGIVLGDIAAEFTTSLRPISETRYQSTLALIRAKAEDSGNYTVRA
EIGNQSASHSFSLQVKVPAAIVDLLDLHHGSETGQAVVCIAKGSPVPEVEWHVCKNIKLC
SNDSSEWSLLQTNTTGMTIDTHIDQDNQLESQVIFGHLENTLAVRCMARNEMVAVSREIK
LVANGPHSELTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYV
DPMQLPYDTRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARS
SEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDTFLS
RQGEKGKKDLDIFGINPADESSRSYVILSFEEKGDYMDMKQADTMQYVPMLERSNASKYL
DREDYDHPPSHKHFNESEVEKLLSDDSEGLTTMDLLSFTYQVARGMEFLASKNCVHRDLA
ARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWS
YGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHASSNVYELMVKCWNNEPEKR
PSFHSLSESMATLLPCGYKRSYERVNNDFLKSDHPAVTRVQCVQSDETYLGVAYKNQCKM
RERESGFEEQRLSSDSGYIIPLPDLDPLSDEEYTKRNRHSSQTSDESAIETGSSSSTLPK
REGETLEDITLLDEMCLDSGDLVEDSFL
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgtgggaagagcctctaccaatgaacacacacgtgctgcctgggtattacacaagcacg
ctgctgattgacgatgcagcagctcatcacacaggagagtactcttgcatttatgaagac
gaagagcagatataccatgaattcattgccagcatttatatttttgtcccagatcctgaa
gttccatttgttccaggggattcgatcaaggtctccaagtatgcaattccttgccgggtt
acagatccccaatcttctgtaattcttcggagtctaccaagtgaggaagagctcagtatg
nagtatgagccaaggtttggatttataggcatcttttctcctggccaacacgtgtgtgaa
accactgtgaatggtgagacggtccggagtgttgtgtacactgtgccagatgatccattt
tatgatgaaccatttatgattaatttaatggagaatgagttcactgtgaaactgatggcc
agtcagaaggacataaaagagggagaagctttcaacctgacctgcacagttccacctgga
gctctgtatgtccagcaatggttgcatctgaaaaaagaggctgtaggtgctattcagaag
aaggagacctaccctgataaggttttgtatatcctcagtatacctcatgcctcaacgaat
gacactggcttctacgaatgctctgtcacagatcagtccagcggcaagatgcgctcttcc
gaagtgaccgttgttgtccacgaggcttcttttattactctggatcacagtgggattgga
gcagtagaaaccattactcttctggaggattctgaatttaccatttacatcaattctgat
gctgttcccaaggtcacttggttccaagatggcaatgtattgaataataattatataacc
accaagaccactcttctagaagacaaaaggtatgagagtgttttggtcctgcgacacccc
atagaagaggacagtggaacatacaagattgtagcatcagtcggctcacagagtaaagag
ttctccttcaaaatcttggttaaagatggtgagacccagataatacagtctactatggct
ccagtaatctggcccaggaaagagactatggaggtgttcctcaactccatgttcagactg
acatgccggggacaagcagaggtggtctgggaaggtcctgtctcctttgacaagcagaat
ttagatgacaaaaatggcctgttcgtctccacggtgactgtggacagtgctacagcaatg
cacacaggagaatacacctgcttctataaaaacgggaatcaaacagaagagagcagcatc
tatatctatgtcccagatccagacatgccatttgtgccccctttactgccctttggacac
catgtgttgaagagtctagaggagatggaagtcccgtgccgcgtgtctgatccaagtact
cacgtgactctgttccatatagagactcgtcagtccgtaccagccaattatgacagcaaa
aggggttttctaggcaactttacacccgggacctatgtatgtcatgcggttgtgaatgga
gaactgcaggaaagtgaagagtacattgtccatggttggactgggggctcaggattgcat
gtggatctaaagatagagaagaaggctctgctggttggagaaaccatcacagtaaactgt
atagccaaaggcagtgacttgttggatcagcaatggaaatatcctggaaaaggggcggat
cgtgctaagacgacacttaaggagaacaagaaagaccaggagatttattacaccctgact
gtgtctgatgccagaactaaagacagtggaaactatgcctgttccatcactgacattatg
agcaatgagagccaaaccaaagagatcagcattattgtttatgagatggagtttgtgtct
ctttctccgatgtttgcccctgtggagaccgccaaactgaacgatgttcgtgagttccgg
ttggacattgaggctcttcctgcacctaaggtcacgtggctaaaggatggcattgtactg
ggtgatatcgccgcagagtttactacctccctccggccgatcagcgagacaaggtaccaa
agcactcttgctttaattagagctaaggctgaggacagtggaaactacacagtgcgagct
gagataggaaaccagagcgccagccactcgttcagccttcaggtcaaagttccagctgca
attgtggacctgctggacctccaccatggctcagaaacaggccaggctgtggtgtgtatt
gccaaaggatctcctgtccctgaggtggagtggcacgtctgtaaaaacattaaactgtgt
tccaatgattcttctgagtggtcacttctacagaccaacaccactggcatgactattgat
acacacatagaccaggacaaccagttggagagtcaggtgatctttggacatctggaaaac
actctggctgtgcgctgcatggcacggaatgagatggttgctgtgtctcgtgagatcaag
ctggtggctaatggtccacattcagagctcactgtggctgctgctgttctggtgctgttg
gttattgtcatcatctcactcattgtgctggtcattatctggaaacagaagccacgttac
gagatcagatggcgagtcattgagtcagtcagtccagatgggcatgagtacatctatgtg
gatcccatgcagctgccctacgacacacgctgggagttcccacgtgatggccttgtcctt
ggccgtatcctgggctcgggggcctttgggaaggtggtagaaggtactgcgtatggactc
agccgttctcagccggtaatgaaagtcgctgtgaagatgctcaaaccaacggctcgctcc
agtgagaagcaagcgctgatgtcagaactgaagatcatgactcacctgggtccccatctc
aatattgtcaacctgcttggtgcatgtaccaaatcaggtcctatctatatcattacagag
tactgtttttatggagacctggtgaactacttgcataagaacagagacaccttcctgagc
cgacaaggtgagaagggcaagaaggacctggacatctttggcattaatccagctgatgag
agcagcagaagctacgtgatcctgtcctttgaggaaaaaggagactacatggacatgaag
caggcagacacaatgcagtatgtcccgatgttggaacgaagcaacgcttccaaatacctt
gacagagaggactatgatcaccctccatctcacaaacacttcaatgaaagcgaagtagag
aagcttctctctgatgactcagagggcttgaccacaatggatcttcttagcttcacctat
caagtggccagagggatggagttcctggcctccaaaaactgtgttcacagagatttggca
gctcgaaatgtcctgttgtctcaggggaagattgtgaagatctgtgactttgggttagcc
agggacattatgcatgacaacaactatgtatccaaaggaagtaccttcctaccagttaaa
tggatggcccctgagagcatctttgataacctgtacaccactctgagtgatgtctggtct
tatggcattttactctgggagatcttttctctcggcgggaccccttatcctggcatggtt
gtggactccagcttctataacaagatcaagagtggctacaggatggccaaacctgagcat
gcctccagtaatgtttatgagctgatggtgaagtgctggaacaatgagccagagaagaga
ccctcattccacagtctgagcgagagcatggccactctgttgccatgcggatacaagagg
agctatgagcgtgtaaataacgacttcctgaagagcgaccacccagcagtgacccgcgtg
caatgtgtgcaaagtgatgagacctatttgggcgtggcttataagaaccagtgcaagatg
agggaacgtgaaagtggctttgaagaacagagactaagctcagatagtgggtatatcatc
cctctgcctgaccttgaccccctttctgatgaagaatacaccaaaaggaatcgtcatagc
tctcagacatctgatgagagtgctatagagacaggatcgagcagctccaccctgcccaag
cgggaaggagagactctggaggacatcacactgctggatgagatgtgtctggactcgggg
gatctggtggaggacagcttcctgtga
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