Silurus meridionalis (southern catfish): 124377159
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Entry
124377159 CDS
T08004
Symbol
fip1l1a
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124377159 (fip1l1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124377159 (fip1l1a)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124377159 (fip1l1a)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
124377159
NCBI-ProteinID:
XP_046692478
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All DBs
Position
23:8970907..8995074
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AA seq
343 aa
AA seq
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MSAVEPEKATGTESVEDEDWLYGEDVDNGRDVAEAAGDEDDEKKTETEIFSALVGDVEGV
NRVDHQDGDADSNTDSDDNLRVTIGDIKTDRMQSINSHVSLKTSGITTVSGGKVSGSVAV
DGFPGAPSLEVEGELEEKPWRRPGADLSDYFNYGFNEDTWKTYCDKQRRLRMSLEFMSLG
SSEKSKGHHDEPVSKSDLSSSVCVSAGECRTPKSSIDVIGGQTETIVCVEGQRLNSTDGN
SMQVQSFSEHPMDAEPPSSKLPPFFAPTIPPPPFPPLPNTPLFLPHPPRFPLPPEVPPLP
LHQAVAIQEEATTAVVPRTSPLLQDTASRSCVVQVCIHILSGP
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgtggaaccggaaaaagcgacaggcaccgaaagtgtggaggacgaggattgg
ctgtacggagaggacgttgacaatggcagagatgtggccgaagctgctggcgacgaggac
gatgaaaagaagacagagactgaaattttcagtgctttggttggagatgtggaaggcgtt
aatagagtggaccatcaggatggagatgcggacagcaacacggacagcgacgacaacttg
cgagttacgatcggcgacatcaaaacagacaggatgcagagcatcaactctcatgtcagt
ctcaagacctcgggaataaccactgtgtcaggcggaaaggtctctggctctgttgcagtg
gatggtttccctggtgctccatcactagaggtggagggagagttggaggagaaaccttgg
agaagaccaggtgcggacctgtccgactattttaactacggcttcaacgaggacacctgg
aagacctactgtgacaaacagaggaggctgcgcatgagcctagagttcatgtccttaggc
tcatctgagaagagcaagggtcatcatgatgagcccgtctctaaatccgatctctcgtcc
agtgtgtgtgtgtctgcgggtgaatgcaggacgccgaaaagctccatcgatgtaatcgga
gggcaaacagagaccatcgtttgtgtggaagggcaaagactaaacagcacagatggaaac
agcatgcaggtgcaatccttctccgaacaccccatggacgctgagccaccgtcctccaag
ctgcctcctttctttgcccccaccattccaccaccaccttttcctcctcttcccaacaca
cctctttttctaccacacccaccacgttttccacttcctcctgaagttcctcctctccct
ttacatcaggcagtggccatccaggaggaagctacgacagccgttgtgccccgtacttcc
cctttgctgcaggacacagcgagtcgttcatgtgtggtgcaggtgtgtatccacatactc
tcgggcccatga
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