KEGG   Silurus meridionalis (southern catfish): 124377278
Entry
124377278         CDS       T08004                                 
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39
  KO
K13217  pre-mRNA-processing factor 39
Organism
smeo  Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smeo03041]
    124377278 (prpf39)
Spliceosome [BR:smeo03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    124377278 (prpf39)
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C Suf TPR_14 HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C TPR_19 TPR_16 TPR_15 TPR_MalT TPR_12
Other DBs
NCBI-GeneID: 124377278
NCBI-ProteinID: XP_046692650
LinkDB
Position
23:complement(14383007..14389601)
AA seq 767 aa
MEQSDLPFSDEAMTAMVGTSASDNGGATAMEGAEDGFVPDLSNLAPEAQWTMDQVPDSFA
ALANQQDPEQGHPEQYQQYSVDGHSNSAPEQKSALSEQQDNSSYVDDGNQPGTNGQTAEV
DLKDSELSSEKQAETGSSDSPANMELEDGSKEESEGGDASVSKSLLPTDFERLYKVVEDD
PEDFNGWVYLLQYVEQENHLLASRKAFDAFFLHYPYCYGYWKKYADIEKKHGCIQEADEV
YRRGLQAIPLSVDLWIHYITFLKENQDTSDGEAENRIRAAYEHAVLAAGTDFRSDRLWEA
YISWETEQGKLANVTAIYDRVLGIPTQLYSQHFQRFKDHVQNNNPKHFLSEEEFVQLRLE
LAAANKPSGEGEEEVPSEELPPGTEDLPDPAKRVTEIENMRHKVIETRQEIFNHNEHEVS
KRWAFEEGIKRPYFHVKALEKTQLTNWREYLDFELENGTPERVVVLFERCLIACALYEEF
WIKYAKYLESYSTEGVRHIFKKACTVHLPKKPTIHVLWAAFEEQQGNIDEARGILKSLEE
AVPGLAMVRLRRVSLERRHGNLDEAEALLEDAIKNAKNGSESTFFSVKLARQFLKVQRNV
GKAKKVLLEAIEKDETSPKLYLNLLELEYSGDVQQNEAEILACFDRALASTMPLESRVTF
SQRKVEFLEDFGSNINVLVATYEQHQKLVKEQESLKRKAENGSQEPDSKRQRIDDGSAAS
GQMMPDMQANHGGYNYNNWYQQYNSWGSPNTWGQYSQYGQYYPPPPT
NT seq 2304 nt   +upstreamnt  +downstreamnt
atggaacaatctgatctgccattttcggacgaggccatgaccgctatggttggcacaagt
gcctctgacaatgggggtgctactgctatggaaggtgcagaagatggctttgtccctgac
ctttctaacttggctcctgaagctcagtggacaatggaccaagtgcctgactcttttgct
gctcttgcaaatcaacaggacccagaacagggccacccagagcagtaccagcagtactcg
gtagatgggcattcaaattctgcaccggagcaaaaatctgccctatctgaacagcaggac
aattcgtcatatgttgatgatggaaatcagccaggaacaaatggacagactgcagaggtg
gaccttaaagattcagagctgagctcagaaaaacaagctgaaacaggcagttcggatagc
cctgcaaatatggagcttgaggatgggtccaaagaagaaagtgagggaggagatgcctcg
gtgtcaaaatctttactccccactgactttgagaggctctataaggtagtggaggatgat
cctgaggactttaatggatgggtttaccttctgcaatatgttgaacaagagaatcacctg
ctggcctcaagaaaggcgtttgatgccttctttctacactatccctattgttatggctac
tggaagaaatatgcagacatagaaaagaagcatggttgcatacaggaggctgatgaggtg
tatcgcagaggtctgcaggccatccccctcagcgttgacctttggattcattatataact
ttcttaaaagagaaccaagacacgagtgatggagaggctgagaatcgcatacgagctgcc
tacgagcatgcagttcttgctgcaggtacagacttcaggtcagatcgtctgtgggaagct
tatatcagctgggagactgagcaggggaagttggccaatgttacagcaatttatgaccgt
gtcctgggtattccaactcagctgtactcccaacacttccagaggtttaaggatcatgtg
caaaacaataatcccaagcacttcctgtctgaagaggaatttgttcagctgaggttggaa
cttgcagctgccaataagcccagtggagagggagaggaggaagtccccagtgaggagtta
ccaccaggcacagaggaccttccagacccagcaaagagagtcacagagatcgagaacatg
aggcataaggtgatcgagacgcgtcaagagatttttaaccacaatgaacacgaggtcagc
aagcgatgggcctttgaagaagggatcaagcgtccatatttccatgtgaaagctttggag
aagactcagcttaccaactggagggagtacctggactttgagctggagaatgggacaccg
gaacgtgtagtggttctgtttgagcgctgcctgatcgcctgtgccctgtacgaggagttt
tggataaagtatgccaagtacctggagagctacagcacagagggagtgaggcacatcttc
aaaaaagcatgtactgtccatctaccaaagaagcctaccatccatgttctctgggcagcg
tttgaggaacaacaagggaacattgatgaggctcgagggatcctgaaaagtctagaggag
gcggttccgggattggccatggtgagactacgtcgtgttagcctcgaacgccgtcatggg
aacttggatgaggcagaagcgcttctggaggacgccatcaagaacgcaaaaaatggaagc
gaatcgaccttcttctctgtgaagctggctcggcaattcctcaaagtacagaggaatgtt
ggaaaggctaaaaaagtattgctagaggccatcgaaaaggatgagaccagtcccaagctc
tatctgaacctgctggagctggagtacagtggagacgtgcagcagaatgaggcagagatc
ttggcatgctttgaccgggcccttgccagcactatgccgttagagtcacgtgtaactttc
tcacagcgaaaagtcgagtttcttgaggactttggaagcaatataaatgtgcttgtagcc
acttatgaacagcatcagaaacttgtaaaagagcaggagtctctgaagaggaaagcagaa
aatgggtcacaagagccggattcaaagaggcagcgcattgatgatggctctgcagcatct
ggtcagatgatgccagacatgcaagctaatcatggaggatacaactataataactggtat
cagcaatacaactcttggggaagtccgaacacttggggccagtacagccagtatggccag
tactatccaccacccccaacatga

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