Silurus meridionalis (southern catfish): 124377427
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Entry
124377427 CDS
T08004
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124377427 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124377427 (cpsf2)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124377427 (cpsf2)
U7-dependent histone pre-mRNA processing factors
124377427 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
124377427
NCBI-ProteinID:
XP_046692862
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Position
23:complement(18589849..18600780)
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AA seq
787 aa
AA seq
DB search
MTSIIKFTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDAMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTENFGLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMLGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCSLEAVSRPSLLITDSFNATYIQPRRKQRDEQLLTNIMETLRNDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDSKNSIILTYRTT
PGTLARYLIDHPGEKLIDLEIRKRIKLEGKELEEYLEKEKIKKETAKKLEQAKEVDVDSS
DESDMDDDLEQPAAVKTKHHDLMMKGEGGRKGSFFKQAKKSYPMFPSHEERIKWDEYGEI
IRSEEFLVPELQATEEEKSKLESGLANGDEPMEQDLSDVPTKCISIKETLEIRSRVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPESSQDLAESCKAFSGKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVLPEDGDPRDDTEN
GEITMDVTSDLMTEPSTVATQRAMKTLFGEDVKEISEESDVIPTLEPLPVTEAPGHQAVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCMCEDYFRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagtttacagctgtgtccggggtgcaggaggaatctgccctctgc
tacctgttacaggtggatgagtttcgcttcctgctggactgtggttgggacgagagcttc
tccatggacatcatcgatgctatgaaaagatatgtccatcaggtcgatgcggtgctcctg
tcgcacccagatccacttcatctcggtgctttgccctacgctgttggcaagctgggtctc
aattgcgccatatatgccaccatccccgtgtacaagatgggccagatgttcatgtacgac
ctctatcagtcacgtcacaacactgagaacttcggcttgttcacgctggatgatgtggat
tccgcttttgacaagatccagcagttaaaatactcgcagattgtaaatctgaaaggtaaa
ggacatggtttgtccatcactcctcttcctgcgggacatatgctcggtgggaccatttgg
aagatcgtaaaggatggagaagaggagattatttatgctgtagattttaaccacaaaaga
gaaattcacctgaatggttgttctcttgaggcagtcagtcgtccctctctgctcatcacc
gattcgttcaatgccacatacattcagcctcgcaggaaacagcgtgacgagcagctcctg
accaacatcatggaaacgctgcgtaatgacggcaatgtgctgatcgcagtagacactgca
ggccgtgtgctggagcttgctcagctgctggatcagatctggagaacgaaggacgcagga
ttgggcgtctactctcttgccttactcaacaatgtcagctacaatgtggtggagttctcc
aagtctcaggtggaatggatgagtgacaagctgatgcgatgcttcgaggacaagcgtaac
aacccgttccaattccgccacctgtctttgtgccacagtttagcagatttggcgcgagtg
ccgagtcccaaagtggtgctgtgcagccaacctgatctggagtctgggttctcacgtgag
cttttcatccagtggtgccaggactcgaaaaactccatcatcctaacgtaccgcactaca
ccgggcacactggcacgctacctgatagaccatcctggagagaagctgatagatttagag
ataagaaaaaggatcaagttggaaggcaaagagctagaggagtatttggagaaggaaaaa
atcaagaaagaaaccgctaaaaaactggagcaagcgaaagaggtggacgttgactccagc
gatgagagtgacatggacgatgatctggagcagcctgccgcagtgaagaccaaacatcat
gatctgatgatgaagggtgaaggaggacggaagggaagctttttcaaacaggctaagaag
tcgtacccgatgttcccttctcatgaggagaggattaagtgggatgagtacggagagatc
ataagatctgaggagttccttgttcctgagttgcaggccacagaggaggagaagagcaag
ctggagtcaggcttggctaacggagatgagcccatggagcaggacctttctgacgttcct
actaagtgcataagtatcaaagagaccctagaaatcagatctcgggtcacttacatagac
tatgagggccgttcagatggtgactccattaagaagattataaaccagatgaagcctcgg
cagctggttattgttcacggacctccagaatctagtcaggacttggccgagtcctgcaaa
gccttcagtggtaaagatatcaaagtgtatacacccaaactgcaggagactgtggacgcc
accagcgaaacacacatttaccaggtgaggctgaaggactctttagtcagctctctgcag
ttctgcaaggccaaagacacagaactggcatggattgatggtgtgctcgacatgcgcgta
gtcaaggtggacacgggtgtgctgccggaggacggagaccccagggacgacacggagaac
ggagagatcaccatggatgtcacctccgacctcatgactgagcccagcaccgtggcaacg
cagcgagccatgaagacactgttcggagaggacgtgaaggagatctccgaagagagtgac
gtcattcctacgttggagccgctgcccgtgactgaggctccaggtcaccaggctgtgttc
attaacgagccaaggctttctgacttcaagcaggttctgctgcgtgagggaatccaggcc
gagtttgtgggcggagtgcttgtctgtaataacatggtggctgtgcgcaggacggaagca
ggccggatcgggctggagggctgcatgtgcgaggattacttcagaattcgggagctgctg
tatcagcagtatgccgtggtgtaa
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