Silurus meridionalis (southern catfish): 124377447
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Entry
124377447 CDS
T08004
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124377447 (taf1b)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
124377447 (taf1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
zf-C2HC_3
Ribosomal_L36
DUF5816
Motif
Other DBs
NCBI-GeneID:
124377447
NCBI-ProteinID:
XP_046692887
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All DBs
Position
23:complement(15910233..15921649)
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AA seq
577 aa
AA seq
DB search
MDEEITDGYSEACGQCGAVCWGVSDGGQFFCKSCHNVIERTRIVEDVNAFKSRISSLSSG
KRKRNETEGARDWMVCEGFQIVLKLQAEALVELGVCSQFKTDVLWVFWKRYIQKTGQAYT
KKPVSRARSSADDSEGESSTVFSDTSCPSELASVKGASTASGFSSDGRSCMRSGSVDAGC
YFRSKESKYRMSMPRTLAFCYLALLWVREAITLSDLLRLVSKGHIPYVNVHEHFPEEMAF
FGKDAPIFRVESFPTYRKVHKEAEELAALLQLPIFPPVTQDCLLHPTLITVRYLMDANLP
DKVHALVCKVIQQTAMGKESFLTFDPAQKKPRLPFYDVQAAAIIVVTMKLLYRLNDKVEW
RLSKKAERKGKKMDHGKKKTKKGGEMFSLRKWYMIVQPALERAREKEKQAKTMQQWKSKK
PIIRHLPIKSVLQKRRRVAEQLQSSFRALSGSSPEQQVSSPSSFLFLWGTEDGADGPSLR
RRCLDCVMMKRKKIWHLVNDKYWHTDLRKCSSSLCGEHFWDLEPTFPRMYMWLLGLFSFI
LGVKEEQLHSAVVQVERRLMNKPHPKCKTTNENGHCS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggagataacagacggttacagtgaagcctgtggacagtgtggagcagtgtgt
tggggagtttcagacggaggacaattcttctgtaaaagctgccataatgtaattgagaga
acaagaattgttgaggatgtgaacgcattcaaaagcaggatttcttctttatcgtcgggc
aaaaggaagcggaatgaaacagaaggtgcaagagactggatggtatgcgaaggctttcag
atcgtccttaaacttcaagctgaagctttagttgaactgggtgtctgctctcagtttaag
acagatgtgttgtgggttttctggaagcgatacatacagaagactggacaagcgtacaca
aagaaacctgtgagcagggccagaagttcagcggacgacagtgagggcgagtcatctact
gttttcagtgacacatcatgtccctctgagcttgcctcagtgaaaggagccagcacagcc
tctggattctcgagtgatggaagaagttgcatgcgttcaggctctgtggatgctggttgc
tacttcagatcgaaagaaagcaagtacaggatgagcatgccccggacactagcattctgc
tacctggcgctgctttgggttcgggaggccatcaccctgtcggacttgctccgcttggtg
tctaagggccacattccttatgttaatgtccatgaacattttccggaagagatggcattc
tttggcaaagatgccccgatatttagagttgagtctttccccacttacagaaaggtgcac
aaggaggcagaggaactggcagcactgttgcagctgcccatttttcctcctgtgactcag
gactgcctcctgcacccaactctgatcactgtacgctatctaatggatgctaatctgcct
gacaaagttcatgccttggtttgtaaagtaatacagcaaacagctatggggaaagaatct
tttctgacctttgaccctgctcaaaaaaagccaagacttccattctatgatgttcaggct
gcagcaatcattgttgtgaccatgaaacttttgtacaggctgaacgataaggtggagtgg
aggttatccaagaaagcagaaagaaaagggaaaaaaatggaccatggcaaaaaaaagacc
aagaaaggtggagagatgtttagcttaagaaaatggtatatgattgtacagcctgctttg
gaacgggccagggagaaagaaaagcaggctaagaccatgcaacagtggaaatcgaagaag
cccatcatccgacatttgccaattaaatcggtcttacaaaaacggagacgtgtggctgag
cagttgcagagcagttttcgtgctctttctggctcttctccagagcagcaggtttcctcc
ccatcttccttcctttttctctggggaacagaggacggagctgatggaccaagtctgcgc
cgcaggtgcctggactgtgtaatgatgaaaaggaaaaaaatctggcaccttgtcaatgat
aaatattggcacactgacttgaggaagtgcagttcgagtttatgtggagagcatttctgg
gacctggagccaacatttcccaggatgtatatgtggttgctgggactcttttctttcatt
ctgggtgttaaagaagagcagctgcacagtgcagtcgtccaggtggagcgacgcttaatg
aataagccgcaccccaaatgtaaaacgacgaatgaaaatggacattgcagttga
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