Silurus meridionalis (southern catfish): 124377473
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Entry
124377473 CDS
T08004
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124377473 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124377473 (cpsf3)
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124377473 (cpsf3)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124377473 (cpsf3)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124377473 (cpsf3)
U7-dependent histone pre-mRNA processing factors
124377473 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
PAP-OAS1
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
124377473
NCBI-ProteinID:
XP_046692932
LinkDB
All DBs
Position
23:complement(15976295..15990016)
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKSDAPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSYKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALILEYEENDDERIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKRNFSYHILTPSDLSNYTDLSMSTVKQTQAIPFTGPFSLLHSQLRHL
AGHVEEVESAEKNTLRIFNSITLIHDTNMVILEWIANPLNDMYADAVTTVVLEVQSNPKA
QKLMQPKEENVDLDLFHTRLQIMFHDMFGEDCVDFKDKNSLSVSVDGKTAYINLETRMVE
YEEGSSDDDSLREMVEHAVQRLYDAMNPVM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaagcgtaaatcagatgcgccggtacccgctgaggaaagcgaccagcttctc
atcagaccgctaggagcgggtcaggaagttggcagatcatgcatcattttggaattcaag
ggacgtaaaattatgttggactgtggtatccaccctggtttagagggaatggatgccttg
ccttacattgatttgattgaccctgctgaaatcgatctactcctcatcagccactttcat
ctggatcactgtggagccctgccgtggtttttacagaaaaccagttataaaggaaggaca
ttcatgacccatgcaaccaaagccatttaccgctggctgctttctgactatgtgaaagtc
agtaatatctcagcagatgacatgctgtacacagaaacagacttggaggaaagtatggac
aagattgagacgatcaacttccatgaggtgaaagaggtggcaggcattaagttctggtgc
taccatgctggtcatgtcttgggtgcagccatgtttatgatcgagattgctggtgtgaag
attctatatacaggagatttctctcgtcaagaggacagacatttaatggcagcggagatt
cccagtgttaagcccgacatcctaatcacagagtctacatatggtacccacattcatgag
aagagagaggaaagagaagctcgtttttgcaacacggtccatgatattgtaaatcgcgaa
ggccgctgtctcatccccgtgtttgctctgggtcgagcacaggagctcttgctcattctt
gatgaatattggcagaatcatcctgagcttcatgacattcctatttactatgcctcatcc
ctggctaaaaagtgtatggctgtgtatcagacctacgtcaacgccatgaacgacaagatc
cgcaaagccatcaacatcaacaacccctttgtcttcaagcacatcagcaacctcaagagc
atggaccattttgatgacatcggtcccagtgtggtgatggcatctcctggtatgatgcag
agtggcctctccagagagctgtttgagagttggtgcactgacaagaggaacggtgtgatc
atcgctggctactgtgtagagggaacacttgccaagcacatcatgtctgagccagaggaa
atcaccaccatgtcaggccagaagctgcagctgaagatgtccgtggactacatttccttc
tcagctcacacggactaccagcagaccagcgagttcatccgagcactcaaaccaccgcat
gtgatcctggtgcacggagagcagaatgagatggcccgcctcaaggcagctcttatatta
gagtatgaagaaaatgacgatgagcgcattgaggtacacaatccccgcaacaccgaggca
gtcacactcaacttcagaggagagaaactggccaaggtgatgggttctcttgcagataag
aagtgtgcacagggtcagagggtctccggaattttggttaaacgcaactttagttatcac
atcctcaccccttcggacctctctaattatacagatttgtctatgagcaccgtgaagcag
actcaagctattcccttcactggacccttttcactactgcacagccagttacgccactta
gcagggcacgtagaagaggtggagtcagcggagaaaaacacactaaggatctttaacagc
atcacattgattcatgataccaatatggttatactagagtggattgccaaccccctgaat
gatatgtatgctgatgcagtcacaacagtagttttggaggtccagtcaaatccaaaagct
cagaaactcatgcagccaaaagaggagaatgtggatctggatctcttccatacccgactg
cagatcatgttccatgacatgtttggtgaggactgtgttgactttaaggacaaaaacagt
ctctctgtatcagtggatggcaagactgcctacattaacctggagaccaggatggtggag
tacgaggaaggcagctcagatgacgactctcttagagagatggtagaacacgcggtgcag
aggctctacgacgccatgaatcccgtgatgtaa
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