Silurus meridionalis (southern catfish): 124377767
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Entry
124377767 CDS
T08004
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124377767 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124377767 (taf5l)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124377767 (taf5l)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124377767 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
124377767 (taf5l)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
124377767 (taf5l)
STAGA complex
124377767 (taf5l)
TFTC complex
124377767 (taf5l)
SAGA complex
124377767 (taf5l)
SLIK complex
124377767 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
TFIID_NTD2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_HPS5
Ge1_WD40
Cytochrom_D1
WD_LRWD1
WDR54
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
124377767
NCBI-ProteinID:
XP_046692988
LinkDB
All DBs
Position
24:complement(5586808..5595846)
Genome browser
AA seq
604 aa
AA seq
DB search
MKRGRTEQIQHAVALYLKRRQYADVDGSLKGTKLSQSTEDMAAHLMVQTESSCGNVVSAA
PCQSDPQQYETQFSRLRSFLLEAEVPLGREASAILFPLFIYLHLDMARCGLKGAVDSFFS
RFHSSFQQEAEQRAMVEHLRGIVTPQDVASNSKLSSLLEHKYVVQLTDEAYTYLLRYLQS
DDNSALCRVLSTHLQVEVSAVRRTDYQLNGTGLTTGNSTSTSCSSGWLGVDGSDGAESVD
VPAGLPPQNEAALEALQDSIRRVREGPPSLTTVCFYAFENTEQLLNAAEVSPDSRLLAAA
FDSSALKLWSLRARKLKAGPCRANVSKIRLACDLVEEETEEEESGSEMKTLRGHSGPVYG
ATFLHDSAGLLSCSEDCTVRFWELRGFSNAAVYRGHAYPVWDIAASPCGLYFCTASRDTT
ARLWTPARAHPLRLYAGHLADVDCVRFHPNSSYIATGSTDRTVRLWSTQHGGSVRLLTGH
RGPVLALAFSPDGRYLVSAGEDQRLRLWDLAAGGVLKELRGHTGAITSLAFSPDSSLIAS
AALDNSVRVWDVRNAGGGGAVPPDGSSPELVGVYMGETSSVLNVQFTACNLLLVTGTAQE
KQEQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcggccggacggagcagatccagcacgccgtggcgctgtacctgaagagacgc
cagtatgccgacgtggacggttcgctgaaagggaccaagttgtctcaatctacagaggat
atggcagcgcacctcatggttcagacagagtccagctgcgggaacgtggtttctgcagct
ccgtgccagtcagaccctcagcagtacgagactcagttctccaggttacgcagcttcctg
ctggaggccgaggtgccattgggcagggaggcgagcgccatacttttccctctctttatc
tacttgcacctggacatggcgcgctgtggcctgaagggggcggtagactccttcttcagc
cgcttccactcctctttccagcaggaggccgagcagagagccatggtggagcatctcaga
ggaatcgtcactccgcaggacgtggcctccaactccaaactgagctctctgttggagcac
aagtacgtggtgcagctgaccgatgaggcctacacctacttattgcgctacctccagagt
gacgacaatagcgccctctgcagggtgctcagcacacacctacaggtggaagtttctgct
gtgcgccgcaccgactaccagctcaacgggacggggctgacgacaggaaactccacttcc
acttcctgttccagcgggtggttgggcgtggacgggtcagacggggcagagtcggtggat
gtcccggcagggttaccgcctcagaatgaggccgccctggaggcactccaggacagcatc
aggcgggttcgcgagggtcctccgtccctcaccaccgtctgcttctacgccttcgaaaac
actgagcagcttctgaatgctgcagaggtgtcgcccgatagccgcctgctggctgctgcc
ttcgacagctctgccctcaagctgtggagcctccgagcccgaaagctgaaggcaggacct
tgtagggccaacgtgtctaaaatacgcctcgcctgcgaccttgtggaggaggagacggag
gaggaggagtcgggcagcgagatgaagaccctgcgcggccacagcggccccgtgtacggc
gcgacgttcctgcacgactccgcgggtctgctctcgtgctcggaggactgcaccgtgcgc
ttttgggagcttcgcggtttcagcaacgctgccgtataccgaggacacgcctaccccgtg
tgggacatcgcggcgagtccgtgcggcctgtacttctgcacagcgtcgcgcgacaccacg
gctcgtctctggactccggcccgtgctcacccgctgcgactttacgccggacacctggcc
gacgtcgactgcgtgcgcttccatcccaactccagctacatcgctacaggctccaccgac
aggaccgtccgtctctggagcacgcaacacgggggatcagtacgcctgctaaccggacac
cggggtcccgtactggccctcgccttctcacctgatggcaggtatctggtgtctgcaggt
gaggaccagcggttgcgtttgtgggacttggcagcaggtggtgtcctaaaggagctgcgt
ggacacacgggtgccatcaccagcctggcgttcagcccggacagctcccttattgcctca
gcagctctggataactcggtgcgggtctgggacgtacggaacgccgggggcgggggggcg
gtgcctccggacggctccagccccgagctggtcggagtttacatgggcgagacaagcagc
gtccttaacgtccagttcaccgcctgcaatctgctgctggtcaccgggacagcgcaggag
aaacaggagcagtga
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integrated database retrieval system
