KEGG   Silurus meridionalis (southern catfish): 124377788
Entry
124377788         CDS       T08004                                 
Symbol
pdcd11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
  KO
K14792  rRNA biogenesis protein RRP5
Organism
smeo  Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:smeo03009]
    124377788 (pdcd11)
Ribosome biogenesis [BR:smeo03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    124377788 (pdcd11)
SSDB
Motif
Pfam: S1_RRP5 S1 Spt6_S1 HAT_PRP39_N HAT_PRP39_C HAT_Syf1_CNRKL1_N Suf OB_RRP5_4th TPR_19 OB_RRP5 HAT_Syf1_CNRKL1_C TPR_14 DUF7017 ARM_TT21_5th TPR_12 NRDE-2 TPR_16 RPN7 TPR_2 PPR META ARM_TT21 Wzy_C_2 TPR_CcmH_CycH
Other DBs
NCBI-GeneID: 124377788
NCBI-ProteinID: XP_046693026
LinkDB
Position
24:12302769..12330205
AA seq 1821 aa
MASAEADFPRGGPAKKTSEKPLKPRVEVDNLFETREPVVKKKKKSQSKHEDEKAAKRQKT
EGALKLNTANNVDILHMKNLKVGTMMLGCVRELLNFEVVLGLPNGLKGYMPVSSVCEAYT
KILSHALDSGTDLEEFVSPSNLLTPGQLVRCVVSSLELSKEGFISLKLSINPKEVNKELN
SSSLKAGMTLSGCVESIEDHGYLIDIGVSGTKAFLPKEKANDKTEATKRDLIVGQYMMVL
LEEVKNEGRVVRLSINPTAVNQACAETQHGWTLSNLLPGLLVQTCIKKVTAHGLIVTFLS
SYTGLVDFMHIDPEKLSTYSVGDEVKARILYVDPSSRLVGLSLRSHLLPPGGIIFDNVMS
ERIGEVLHGCKMTAVHHHSGAVMELPDGTTAFVHKSHLKESKEVFNPNRLLAQPEHTLRI
TDYSPMEQIHMATLRKAIIESPFYSYQDIKPGQMVEGTVQSLEKYGLIIKISDHIKGLVP
RIHLADIILNNPEKKYKDGMRLKCKVLSVDYQNKKITMSRKKALMETTLPLILSYADARV
GLVSHGFIVCIKDFGCIVKFYGEVKGLVPMSELTSEPFDNPCSLFYIGQVVKAKVLKCDV
KNEKLLLSFKAVSQRDIEKGQHVKFDFKIGKKVEVIVRKKSETAVEVSILPEDIPALLPT
AQLSDHVSNCPLLLAGLQEGDTISNVVCLNQNKEIIILSKKPLLIAALEAENLVKSFSEL
QVGMVMVGWVKNIMPYGVFVSFPHGLFGLAPKAVMTDKFITDTAGVFEVGQTVLAKVTNL
DXEKHRFLISLKVSDVSLAESSAQARMIQGQRERLAVYDAMSSRVDSDLLQQLSSVSLGD
KLKMTVDVTREDGSVVLTSDQLSHATVLASKYHVTDVNTAPGNQVTAVVLHVDFLTSEVH
VSLLPTLTAKKKKLTKGSQYSAXVQYVDKDFAVISLGATGHLTVISTCNHLNGTFHFESE
KLSVGRKVTVTVIEPSSEDLGRQALVDYQLSAPVKCNQTTFQNRDEDNKYKIGAFVTATV
KTIKPLCVLMTLPDGVTGSVHVSQVQESPKIGGFPTSSLKVGTEVKARVFGGREIKSHRF
LPITHPNLVFSMPELTLLPSKLDNSVDVTSLVNTSKWESYKPGQEITCYVSKYIPKTKCL
HVEVSPKVFGLVELLAMTTKPREANHPQKLFKHGQCVSAKVVQVVPKKLSHLRLSLIGTH
TLENGVVTMGMVWKINPQKGLFLNLPFGNSGTACITDLSDDYENAPLEQYKEGQMVRCCI
IGEEHGKFQVSLRLSRIHSGKFLKVKDVDISAASELQEGQIIQGYIKNVGEMGIFIRLSR
SVTGRVKFQHATNYFAIDPELFPKHVSPNALLTTKVLSIDAKTGHVELSLLPEDTGKADI
LPESLGLPLRLKGKAKEKHDKKNATKKRKMSESQQNEAGLKKKLKKEEKAAELPKKKKVA
KEPQAEDQDSGVEVYFREKDKNKTKKEGKSKAAAPEEPGRLQVASDFSWDIGLSSLKPAS
SAQNAYESSDEEQDDHSKTQKKSRREAELERKEAELKLSKLEAELMEPSARPESAEAFER
LLLSSPDSSLLWLQYMAFQLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENM
YGTEESLQKVFERAIQYCEPMPVYQQLADIYAKSNKLKEAENLYKNMVKRFRQEKAVWQS
YGSFLLRQGQSDAANALLQRALQSLSNKEHVDLIIRFARLEFQYGNEERAKAMFEKVLSS
YPKRTDLWSVFLDLMMKHGSQKDVRALFDRVVHLSVSVKKVKFFFKRYLDYEKKHGTPES
IQTVKQKAQEYVESKGADAAN
NT seq 5466 nt   +upstreamnt  +downstreamnt
atggcgtcagcagaggcggatttccctcgtggtggcccagccaagaaaacctctgagaaa
cctctgaagcctcgtgtggaagtggacaatctttttgagactcgtgaacccgtagtgaaa
aagaagaagaaatctcagagcaagcatgaagatgaaaaggcggccaagaggcaaaaaacc
gaaggtgctctgaagctaaacacggcgaacaacgtggatattctccatatgaagaatctg
aaggtgggcaccatgatgctcggctgtgtaagggagctcttgaactttgaggttgtactc
ggtctccctaatggtcttaaaggctacatgcccgtctctagtgtctgtgaggcctacaca
aagatcttgagccatgcactggactctgggaccgatcttgaggaatttgtgtctccctcc
aacctcctcaccccaggccagttggtcagatgtgtggtttcatccctggaattgtccaaa
gagggttttatcagtcttaaattgtctatcaacccgaaagaggtgaacaaggagctcaac
tccagctctctgaaagcaggcatgactctcagtggttgtgtggagagcatcgaggatcac
ggttacctgatcgacattggagtgagtggaaccaaagctttcctgcccaaagagaaagca
aacgataaaaccgaggcaactaaaagagatctgatagtagggcagtacatgatggtctta
ctggaggaggtgaagaatgagggacgggtggtgcgtctttctataaaccctacggcggtt
aatcaggcctgcgcagagacgcagcacggttggacactgagtaaccttttacccgggtta
ttggtccaaacctgcatcaagaaggtcacagctcatggcctgatagtaacatttctctca
tcgtataccggactggtggacttcatgcacatcgaccccgagaaattgtccacttacagt
gtaggggacgaggtgaaagctcgtattctctatgtggacccgtcctctcgtctggtgggt
ctgtctctgcgcagccacctcctaccaccagggggcatcatatttgacaatgtaatgagt
gagcgaataggtgaggtgctgcatggttgcaagatgactgccgtacaccaccactcagga
gccgtgatggagctgccagatgggaccactgccttcgtgcacaaaagccatttgaaagaa
tccaaagaggtgtttaacccaaaccgactcctcgctcagcctgaacacacactgaggata
acagactacagcccaatggagcagatccacatggctacgctgcgcaaggcaatcatcgaa
tcgcccttctacagctatcaagatattaaaccagggcagatggtcgagggcacggtgcag
agcctggagaagtacggcttgattatcaaaatctcagaccacattaagggcctcgttccc
agaattcacctggcggatataatcctcaacaaccctgaaaaaaaatacaaggacggcatg
aggctcaaatgtaaagtcttatcagtggactaccaaaataagaagatcacaatgagcagg
aaaaaggctctgatggagacgacactcccacttatcctgtcctatgcggatgcccgtgta
ggtctcgtatcccacggctttatcgtctgcatcaaggattttggctgcatcgtaaaattc
tatggtgaagttaagggcctggtgccgatgtctgagctgacgtcagagccctttgacaac
ccgtgtagtctcttttacataggacaggtggtgaaagcgaaagtgcttaaatgtgatgtt
aaaaatgagaagctgctcctgtcctttaaagcagtgagtcagagggacatcgagaagggc
caacacgtcaaattcgactttaaaatcggaaagaaagtggaagtgattgtacgcaagaaa
agcgagactgctgttgaagtgtctattctcccagaagacatacctgctctgcttcccacg
gcgcaactttctgaccatgtgtccaactgccctctgctgttggcgggtctacaggaagga
gacaccatctccaatgttgtgtgtctgaaccaaaacaaggaaatcatcattctcagtaag
aagcccctactgattgcggctctcgaggctgaaaacctggttaagtctttctctgagctg
caggtggggatggtgatggtgggctgggtgaagaacatcatgccttatggcgtctttgtc
agcttcccccacggcctgtttggccttgcacctaaagctgttatgactgacaagttcatc
actgacactgcaggagtgtttgaggtaggacagaccgtgctggccaaagtgaccaacttg
gatngagagaagcaccggttcttgatcagtctgaaggtatcggatgtgagtttggcagaa
tccagcgctcaggccagaatgatccagggtcagcgtgaaagattagctgtctacgacgca
atgagctcgagagttgactcagacttgctgcagcagctctcctccgtgtcactgggagat
aaactcaagatgaccgtcgacgtgaccagagaagacggctctgtcgtcctgacctctgat
cagctcagccatgccacagtgctggcctcaaagtaccacgtaacagatgtgaacacagca
ccaggcaatcaggtcactgctgtggtgcttcacgttgattttttgacctctgaagtgcac
gtgtcccttctgccgacgctcacagcaaagaagaaaaaattaactaaaggctcccagtat
tccgcanacgtccagtacgtggacaaagactttgccgtgatctcattgggcgccaccggt
cacctgaccgtcatttccacatgcaatcacctaaacggaacgttccatttcgaatcagaa
aagctgtctgtgggtcgtaaagtgaccgtgactgtaattgaacccagcagcgaagatttg
ggtagacaagctctcgtagactatcagctatcagctcctgtaaaatgcaaccaaaccacg
tttcagaatagagatgaagataataaatataagatcggggcctttgtgacagcgacggtt
aaaaccattaaacctctgtgcgtactcatgactttgccggatggagtcacgggaagcgtg
cacgtttctcaggtccaggagtcgcccaaaataggaggattccccacgtcgtctcttaag
gtcggcactgaagttaaggcaagggtcttcggcggtcgtgagatcaagagtcataggttt
ctccccatcacacatcccaacctcgtcttctctatgcctgagctcactctcctccccagt
aaactggacaacagtgtggacgtcacctcgctggtgaacacgtctaaatgggagagctat
aaacctggacaggagatcacgtgctatgtatctaaatacattccaaagacaaagtgtctt
catgttgaagtgtccccgaaagtctttggactggtggagttgctggcaatgaccactaaa
cctagagaggcaaatcacccacaaaagctcttcaaacatggccagtgtgtctccgcgaag
gtcgtccaggtcgtccccaaaaagctttcccatctcagactttcccttatagggacgcac
actctcgagaatggggtcgttaccatgggcatggtgtggaaaatcaacccccagaagggc
ttgtttctgaatctgccgttcgggaattccggcacggcgtgcataaccgatttatcagac
gattacgaaaacgctccgcttgagcaatacaaagaaggccagatggtcaggtgctgtatc
attggtgaagaacatggaaagttccaagtgtctttgcgtctgtccaggatccactctggg
aaattcttgaaagtcaaagatgtggacatcagcgctgcctctgagctccaggagggacag
atcattcagggttatattaagaacgttggagaaatgggcatattcatcaggttatccaga
tcagtcacaggaagagtcaagttccaacacgctacaaactactttgctatcgatcctgaa
ttgttccccaaacacgtctctccgaatgcactgctgacaaccaaagttcttagcattgac
gcaaagaccggccatgtggagctctctttgctccccgaggacaccggaaaagcagacatt
ctcccagaatcccttgggcttccactgcgcctcaagggaaaggcaaaggagaagcacgac
aaaaaaaatgctacgaagaagcgcaagatgtctgagagccagcagaatgaagctgggcta
aagaagaaattaaagaaagaagaaaaggctgcagagttaccgaagaagaaaaaagttgcg
aaggaaccacaagctgaagatcaggatagtggagtcgaggtgtatttcagagaaaaagac
aagaacaaaacaaagaaagagggtaaaagtaaagctgcagccccagaagaaccaggcagg
ctacaggtagcatctgatttctcctgggacatagggctgagctctctcaaacctgcatct
tctgcccaaaatgcatacgagtccagcgacgaagagcaggacgatcacagcaagacacag
aaaaagtctcggcgggaggcggagctggaacgtaaggaggcggagctgaagctcagcaag
ctggaggcggagctcatggagccctcggcccgaccggagagcgcggaggcgtttgagcgg
ctgctgctctcgtcaccagactcgtctctgctctggctgcagtacatggcattccagctg
caggccacccagatcgagcaggctcgtgctgtcgccgagagagccctcaaaaccatctcc
ttcagggaggagcaggagaagctgaatgtgtgggtagctctgctcaacctggagaacatg
tacggtactgaagagagtcttcagaaagtgtttgagcgagccattcagtactgcgagcca
atgcctgtttaccagcagctggcagatatttacgccaagtccaacaagctcaaggaagca
gagaacttgtataagaacatggtgaagcgttttaggcaggagaaggccgtgtggcaaagt
tacggatccttcttgctgcgtcagggccagagcgacgccgccaatgctctcctccagagg
gcactgcagagtctgtccaataaagagcatgtggacttgatcatcagatttgctcggctg
gagttccagtacgggaacgaagagcgagccaaggctatgttcgaaaaagtcctgagcagc
tatccaaaacgtactgacctgtggtctgtttttctagacctgatgatgaagcatggctcg
cagaaagatgtccgggccctatttgatcgtgtggtccacctgagtgtgtctgtaaagaag
gtcaagttcttcttcaagcgctaccttgactacgagaagaagcacggcacacccgagagc
atccaaacagtgaagcaaaaagctcaagagtacgtggagtcaaaaggagccgacgctgca
aactag

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