KEGG   Silurus meridionalis (southern catfish): 124377789
Entry
124377789         CDS       T08004                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    124377789 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smeo03021]
    124377789 (taf5)
   03036 Chromosome and associated proteins [BR:smeo03036]
    124377789 (taf5)
Transcription machinery [BR:smeo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     124377789 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     124377789 (taf5)
Chromosome and associated proteins [BR:smeo03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     124377789 (taf5)
    STAGA complex
     124377789 (taf5)
    TFTC complex
     124377789 (taf5)
    SAGA complex
     124377789 (taf5)
    SLIK complex
     124377789 (taf5)
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st TFIID_NTD2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_1st WDR55 Beta-prop_WDR36-Utp21_1st NBCH_WD40 Beta-prop_VPS8 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_Nup120_160 Tricorn_2nd VPS8_N LisH_PAC1 PEP5_VPS11_N PROPPIN Beta-prop_ACSF4 RAB3GAP2_N LisH_TPL
Other DBs
NCBI-GeneID: 124377789
NCBI-ProteinID: XP_046693028
LinkDB
Position
24:12292518..12300057
AA seq 783 aa
MKHSPAPTEERTQSGGTYLPSSPYPLPSQTSLRHRVDVVLRRRGKMAAVHDGPSDVESEK
DPKADSLSDESAANLPGIMSGTLSSTSPLAAPSAAAPKAEEQQQTLLAVLQFLRRNNLTE
SVNILKREAGIQNELEEARGAEATATGLSTGPGDTSSLLSRVSSQTGAPVKAAGGADQPD
VNVVLSAYSQQGDPSLYQVYYSGLKKFIESVLDCHRAELSQLFYPLFVHMYLELVYNNHE
NEAKAFFEKFSGDQECYYLDDLRVLSSLSKKEHMKGNETLLDFRTSRFVLRISRDSYQLL
KRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSTSGSLAGEARREANKAKVFYGLL
KEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSIGSKSKKQDPNAPQQNRIPLPELKDSDK
LDKIMYMKEATKRLRLGTETLPSICFYTFLNAYQGLTAVDITDDSSLIAGGFADSTVRVW
SVTPKKLRRVKSAADLSLIEKESDDVLERIMDEKTASESKILYGHNGPVYAVSFSPDRNY
LLSSSEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFCAHGYYFVSGGHDRVARLWATDHH
QPLRIFAGHLSDVTSTHFHPNSNYLATGSADRTVRLWDVLNGNCVRILTGHKGPIHSLAF
SPSGKYLASGSTDGRVLLWDIGHGLMIGELKGHTDTIYALKFSRDGEILASGSMDNTVRL
WDFTKAVDDVETDDFTAATGHVHLPDNSQEVLLGTYLTKSTAVIHVHFTRRNLLLAAGAY
ISQ
NT seq 2352 nt   +upstreamnt  +downstreamnt
atgaaacacagcccagccccgacagaagaacgcacccaatcaggtggcacgtatttgccg
tcgtccccgtaccccctcccttcccaaacgtccttgcgtcatcgcgtcgatgttgtgttg
cggcgtcgaggcaaaatggcggctgtgcacgacgggccgagcgacgtcgagagcgagaaa
gacccaaaagccgacagtctgagcgacgagtcggcggccaacttgcccggaatcatgagc
gggacgctctcgtccacgtccccgctcgcggctccgtcggccgcggctccgaaagcagag
gagcagcagcaaactttactcgccgtgctacagttcctgaggaggaacaacctaacggag
tctgtgaatattttgaagcgcgaagcgggtatacagaacgagttagaggaggcgcgcggg
gcagaagctacagcaacgggcctgagtaccggacctggggacacgagctcactccttagc
cgggtgtcttcccaaaccggcgctccggtcaaagctgcaggtggagcggaccagccggac
gtcaacgtcgtcctctcggcgtacagccagcagggcgatccttcattgtatcaggtgtac
tacagcggactgaagaagttcatcgagtcggtgctggactgtcacagggccgagctgtcg
cagctcttctacccgctttttgttcacatgtatctcgagctggtttacaacaaccatgaa
aatgaagcaaaggcttttttcgaaaagttcagcggagaccaggagtgctactacctggac
gatttgcgtgtgctctcgagcctcagcaagaaggagcacatgaaaggcaatgagacgctg
ctagatttccggacgagtcgctttgtgctgcgcatttcccgcgactcctaccagctgctg
aagcgccaccttcaggagcgccagaacaaccagatctggaacatcatccaggagcacctc
tatattgatattttcgatggtatgccacgaagcaagagtcagattgacagcacatccggc
agcctggctggagaagctcgcagagaggccaacaaagccaaggtgttctacgggttgctg
aaggagccagagatcgaggtccctctcgacgacgaagatgaagaagccgagaacgaagag
ggcaaacccaagaagaagaagccaaagaaagacagcataggttcaaaaagcaagaagcag
gatcccaatgcccctcaacaaaacaggattcctctaccagagctcaaggactcggataaa
ctggataaaatcatgtacatgaaagaggccaccaagaggctacgtttaggcacggagacc
cttccctcaatatgcttctacacgtttctcaatgcctaccagggtctgacggcggtggac
attacagacgactcaagtctaatagcagggggctttgccgattccaccgtgcgtgtctgg
agcgtcacacccaagaaactccgcagggtcaaatccgcagcagatctcagtctcatagag
aaggagtctgatgatgtgcttgaaaggataatggatgagaaaacagccagcgagtccaag
atcctgtacggccacaacggcccagtgtacgccgtcagcttcagtcccgacaggaattat
ctgctgtcgagttcagaagatggcaccatcaggctgtggagcttgcaaacctttacctgt
ctagtagcttataaaggacacaattacccagtgtgggacactcagttttgtgcacatgga
tattattttgtctctggaggacatgacagagtggcacggttgtgggcaacggatcaccac
caaccactgcgtatattcgctgggcatctctctgacgtcacctccacccacttccaccca
aactccaattacttggccacaggttcggctgatcgcaccgtgcgcctgtgggacgtcctg
aacggcaactgcgtccgcattttgactggccacaaggggccaatccactcgctggcattc
tcacccagtggtaaatacctcgcgtctggctcaaccgacggcagagttctgctgtgggac
atcggccacggactcatgatcggcgaattaaagggtcacaccgacaccatctacgcactc
aagttcagcagagatggagagatcctcgcctcaggttccatggacaacacagtccggctg
tgggacttcacaaaagccgtggacgacgtggagacggacgacttcacagcagccaccggt
cacgttcacttacccgacaattcccaggaggtattactggggacgtacctgactaaatcc
accgccgttatccacgtccacttcaccagacgcaacctgctcctggctgccggtgcatac
atctcccagtga

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