Silurus meridionalis (southern catfish): 124378170
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Entry
124378170 CDS
T08004
Symbol
xpo1a
Name
(RefSeq) exportin-1
KO
K14290
exportin-1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03008
Ribosome biogenesis in eukaryotes
smeo03013
Nucleocytoplasmic transport
smeo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124378170 (xpo1a)
03008 Ribosome biogenesis in eukaryotes
124378170 (xpo1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
124378170 (xpo1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124378170 (xpo1a)
03009 Ribosome biogenesis [BR:
smeo03009
]
124378170 (xpo1a)
03016 Transfer RNA biogenesis [BR:
smeo03016
]
124378170 (xpo1a)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124378170 (xpo1a)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124378170 (xpo1a)
Ribosome biogenesis [BR:
smeo03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
124378170 (xpo1a)
Pre-60S particles
124378170 (xpo1a)
Transfer RNA biogenesis [BR:
smeo03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
124378170 (xpo1a)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
124378170 (xpo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
TPR_TNPO3_IPO13_2nd
BspA_v
Motif
Other DBs
NCBI-GeneID:
124378170
NCBI-ProteinID:
XP_046693665
LinkDB
All DBs
Position
24:5323341..5339761
Genome browser
AA seq
1071 aa
AA seq
DB search
MPADMTMLADHTARQLLDFSQKLDINLLDNVVNSMYYDVGSQQRLAQEVLTNLKDHPDAW
TRVDTILEFSQNMKTKYYALQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDASVV
EKEGVYLAKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVNQYEEQFVSLFTLTMMQLKQMLPL
NTNIRMAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRPNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGSQHFDVPPRRHLYLPVLSKVRLLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWRNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEKYMLL
PNQVWDSIIQQATKNVDILKDPETVRQLGSILKTNVRACKAVGHPFVVQLGRIYLDMLNV
YKCLSENISSAIQTNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFVPPL
LEAVLIDYQRNVPAAREPEVLSTMATIVNKLAAHITAEIPKIFDAVFECTLNMINKDFEE
FPEHRTNFFYLLQAVNSHCFPAFLAIPAAQFKLVLDSIIWAFKHTMRNVADTGLQILYTM
LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISI
TLNTSAPVNNQVYVQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLV
QIKEFAGEDTSDLFLEERELSLRQAQEEKHKLQMSVPGILNPHELPEEMCD
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagatatgacaatgttggcggaccatacagcacggcagctgctggacttctct
cagaagctggacatcaacctgctcgacaacgtggtcaactccatgtactacgacgttggc
tctcagcaacggctggcacaggaagtcctgactaacttgaaggatcacccggacgcatgg
accagagtggacaccatcttggagttctctcagaacatgaagaccaaatactacgcactt
cagattctggaaaatgtcattaaaacgcgctggaaaattctccccaggaaccagtgtgaa
ggaattaagaaatatgttgtaggtctgattatcaagacctcctcagacgcgtctgtggtc
gagaaagagggagtttacctggccaagctgaacatgatcttggtgcagatcctaaagcag
gagtggccaaagcactggcccacgttcatcagtgacatagtgggtgcgagtcgtacgagt
gagagcctctgccagaacaacatgatcatcctaaagctgctcagcgaggaggtgttcgac
ttctccagtggacagatgactcaggtcaaagccaagcatcttaaagacagtatgtgcaac
gagttctcccagatttttcagctttgccagtttgtcatggaaaattcccagaatgctcca
ctggtccacgccacattggagactctcttgcgcttcttgaactggattccactgggctac
atttttgagaccaaactcatcagcactctggtgtacaagtttctgaacgtcccgatgttt
cggaacgtgactctgaagtgtctgactgaaatcgctggagtcagcgtgaatcagtacgag
gagcagttcgtcagcctcttcactctgaccatgatgcagctcaaacagatgcttcctctg
aacacgaacatccgtatggcgtactcgaacggaaaagatgatgagcagaacttcattcag
aacctcagcttgttcctctgcactttcctcaaagagcacgggcagctgattgagaagagg
cccaacctgcgggaaacacttatggaggctcttcattatatgctgctcgtgtcggaggtg
gaggagactgagatctttaagatctgtctggagtactggaaccacctggcagccgagctg
tatagagagagtccgtttagcacgtccacatcacccctgctttctggcagccagcacttt
gatgtgcccccacgcagacacctctacctgcctgtactgtctaaagtgcgtctcctgatg
gtgagtcgcatggctaagccggaggaggtgctggtggtggagaacgatcagggtgaagtg
gtgagggagttcatgaaggacacagactcgatcaacctctataagaacatgagagagact
ctggtgtacctgacccatttggactatgctgatactgagcgaatcatgaccgagaagctt
cataaccaggtaaacgggaccgagtggtcgtggaggaacctaaacacgctgtgctgggcc
atcggatccatcagtggagccatgcacgaggaagacgagaagcgctttctggtcacagtc
attaaggatctgctgggcctgtgcgagcagaagagagggaaagacaacaaggccatcatt
gcctccaacatcatgtacattgtagggcagtacccacggttcctccgtgcccactggaag
ttcctcaagacggtggtcaacaagcttttcgagttcatgcacgagactcacgacggcgtg
caggacatggcgtgcgacaccttcatcaagatcgctcagaaatgcaggaggcactttgtt
caagtgcaagtcggggaggtcatgccattcatcgacgagatcctcaacaacatcaacacc
atcatctgcgacctgcagccgcaacaggtgcatacgttctacgaagccgtaggctacatg
atcggtgctcagacggaccaagcagtgcaggagcatctgatcgagaagtacatgctgctc
cccaaccaggtgtgggatagcatcatccagcaggccaccaagaacgttgacatcctgaag
gacccagagaccgtgcgtcagctcggcagcatcctgaagaccaacgtgagggcgtgtaag
gccgtgggtcacccgtttgtggtgcagttagggcgaatctatttagacatgcttaacgtt
tacaagtgtctgagtgagaacatctcgtctgcaattcagaccaacggtgagatggtgacc
aagcagcctctaatccggagcatgcgcacggtaaagagagaaactctgaagctcatctcc
ggctgggtcagccgttccaacgatccccagatggtcggagagaacttcgttcctcctctg
ctcgaggccgtgctgatcgactatcagaggaacgtccctgctgctcgcgaacccgaagtg
ctcagcaccatggcaaccatcgtcaacaagctcgcggcccacattaccgcggaaatcccc
aagattttcgatgccgttttcgagtgcaccctaaacatgatcaacaaggactttgaggag
ttcccagagcacaggaccaacttcttctacctgctgcaggcggtcaactcacactgcttc
cctgcttttctggccatccctgcggcccagttcaaactggtcctggactccatcatctgg
gcttttaaacacaccatgaggaatgtcgctgacacgggtctccagatcctgtacacgatg
ctgcagaacgtggcccaggaggaagctgcagctcagagcttttatcagacgtatttctgc
gacatcctgcagcacatcttctccgtcgtcacggatacgtcccacacggcaggtttgacg
atgcacgcctccatcctggcctacatgttcaacctagtcgaggaggggaagatcagtata
accctgaacacaagcgcacccgtgaacaaccaggtctacgtacaggaatatgtggccaac
ctgttgaaaactgccttcccgcacctacaagatgcacaggtgaaagtgtttgtaaccggt
ctgttcagcctgaatcaggacattcctgctttcaaagagcacctccgggacttcctggtg
caaataaaggagtttgccggcgaggacacgagcgatctgttcctggaggagcgagagctg
tcgctacgtcaggctcaggaggagaaacacaaactccagatgtccgtgccgggaatcctc
aatccccacgaacttcctgaggaaatgtgcgactga
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