Silurus meridionalis (southern catfish): 124378222
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Entry
124378222 CDS
T08004
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04137
Mitophagy - animal
smeo04140
Autophagy - animal
smeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124378222 (hif1aa)
04137 Mitophagy - animal
124378222 (hif1aa)
04148 Efferocytosis
124378222 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124378222 (hif1aa)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
124378222 (hif1aa)
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GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
124378222
NCBI-ProteinID:
XP_046693734
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Position
2:complement(27080366..27101668)
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AA seq
597 aa
AA seq
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MTSGATSEKKRQSCERRKARCRDAARCRREKETEVFNQLANQLPLHHSITESLDKASVIR
LTLSYLHLRSALNTVMMGELSDLDSQWTAFCLKALDGFLMILSQDGDVVYTSETVSKCLG
ISQIDLSGQSVYDFTHPCDHEEIREMLLNKTGSCKKTKDEQSFLLRMKCTLTSRGRTVNL
RSATWKVLHCSGHVRVECTRNSECEESNVPVSYLVLICEPIPHPANIEVLLDSRTFLSKH
TLDMRFSYCDERITELLGYDPEDLLQRSVYEFYHALDSDSLTKTHHNLFVKGQACTGQYR
MLVKGGGFVWVETQATIIYNSKNSQPQCVICLNYVLSGVEEPELILSLHQSAMKQEKEDG
GGTNREPGSQEAVTEIKEKTEEKEEGETDLQAVSDITLDFNNTGTSALEDAPLYNDVMLP
STSVLSPLSSPTDPPRAALPRLDDFPFPSSAHGSTQTVEDLELEMLAPYISMDNDYQLHM
HTQADSLDNLYSDQKKPTTHICDAQHRKQMDGHLSLSQPNQKRKLETTSLPHSTGPGSIF
QVVTHTPQVKRSKVTVLETRPPATMPETLTILLLPSDVLNQLMAGGAIIKPLPHIAR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaggagccacatccgaaaagaaaagacagagctgtgagaggaggaaggcgagg
tgtcgcgatgcggcacgctgtaggcgggagaaggagacggaggtgtttaatcagctggcc
aatcagcttcctctccatcacagcatcacagagagcctggataaagcctcggtcatccgc
ctgacactgagttacctgcatctgcgctcggctctcaacacagtgatgatgggcgagctg
tccgatttggacagtcagtggaccgctttttgtctaaaggcccttgatggttttctcatg
atcctctctcaggacggagatgtcgtttacacatcagaaaccgtcagcaagtgtctgggg
atttctcagatcgatctgtcaggacagagtgtgtatgatttcacacacccatgtgaccat
gaagagatcagagaaatgctgcttaacaaaacaggctcctgtaagaaaacaaaagatgag
cagagttttctattgcggatgaagtgcactctgaccagtagggggcgcactgtcaacctc
agatctgctacatggaaggttctccactgttctggtcacgttcgtgttgagtgcacacgg
aacagtgagtgtgaagagagcaatgtgcccgtctcatacctggtgctgatctgtgagccg
attccacatccggccaacattgaggttcttctagactccagaacgttcctgagcaagcac
acgcttgacatgcgcttctcctactgtgacgagcggataacagagttgttgggttatgac
cctgaggatctccttcaacgttctgtgtatgaattctatcacgctctggattcagacagt
ctcaccaaaacacaccacaacttgtttgtaaaaggtcaggcgtgtacaggtcagtaccgt
atgctggtgaagggtggaggctttgtgtgggtggagactcaggccaccatcatttacaac
agtaaaaactcccaaccacagtgtgtgatctgcctcaactatgtcctcagtggcgttgaa
gaacccgagctcattctttccctccatcagtcagcaatgaagcaggaaaaggaagacggg
ggcgggacaaatcgagagccagggagccaggaagcagtgactgagataaaggagaagaca
gaggagaaggaagagggagaaacagatctacaggctgtcagtgacatcacactggacttc
aataacactggaacatcagcactcgaagatgctcctctctacaacgacgtcatgctgccg
tccaccagcgtcctgtcacctctgtcatcacctaccgatccaccccgtgccgctctgcct
cggctggatgacttccccttcccatcatccgcccacggttccacacagacggtggaggat
ctggagttggagatgttggcgccgtacatctccatggataacgattatcagctccacatg
cacacacaggcagacagtctagacaatctttattctgaccagaaaaaacccacaacacat
atttgtgatgcacaacacagaaaacagatggatgggcatttgtctttaagtcagccaaac
cagaaacgaaaattagaaactacttctctacctcattccacagggccgggttcgatattt
caggtggtaacacacacacctcaggtcaagaggtcaaaggtaaccgttttggagactcgt
ccaccggccaccatgccagagactctgactatactgctactgccctcagacgtgttaaac
cagttaatggcaggaggagccatcattaagcccctcccacacatcgctcgctaa
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