Silurus meridionalis (southern catfish): 124378770
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Entry
124378770 CDS
T08004
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124378770 (exosc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124378770 (exosc2)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
124378770 (exosc2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
124378770 (exosc2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
Lantibiotic_a
Motif
Other DBs
NCBI-GeneID:
124378770
NCBI-ProteinID:
XP_046694489
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Position
25:complement(5153984..5158483)
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AA seq
295 aa
AA seq
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MAVDMRLPARKQTCFPISNSSSDHKHLVVPGDVITSDTGFMRGHGTYMDDEKLTASVAGE
VERVNKLICVRPLKTRFNGEVGDVIVGRITEVCESKRWKVETNSRLDSVLLLSSVNLPGG
ELRRRSAEDELSMRDYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGILVQVSPSL
IKRQKTHFHNLTCGASVILGNNGYIWIYPTPGHHDEEAGGYYTSLEPVPLSDREVISRLR
NCLLALAAHKVMLYDTSILYCYESSLTHQIKDILKPETMDEIVMETRQRLLDQEG
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggatatgagattacctgcgagaaaacagacgtgttttccaatttctaattcc
agctcagaccacaaacatttggtagttccaggggatgtgatcacatcagacacagggttc
atgagaggccatggaacgtatatggacgatgagaaactcactgcttctgtggctggtgag
gtagaacgagtcaacaagctcatctgcgtgagaccactgaagacaaggttcaatggtgaa
gtcggtgatgtgattgttggtcggatcactgaggtttgtgaatcaaaacgctggaaagtg
gagacgaactctcgtctggactcagtattacttctgtcttcggtcaatcttcctggagga
gagttgaggaggcgatcagcagaagacgaactttccatgagagactaccttcaagaaggg
gacctcatcagtgcagaggtacagtctgtgttttcagacggcgccctctctctccacaca
cgcagcttaaaatacggaaagctgggtcagggtattctcgtgcaagtctcaccatcactc
atcaagagacagaaaacccatttccacaacctgacatgcggagcgtccgtaatattaggg
aacaacggctatatctggatttaccccaccccggggcaccatgatgaagaggcaggaggg
tattacacaagcctagagcccgttcctctctcagaccgggaagtcatttctagactgagg
aactgtttactggctctggcagctcacaaagtgatgctgtatgacaccagcatcctctac
tgctatgaatcatctctgacacaccagatcaaagacatcctgaaaccggagaccatggac
gaaatcgtgatggagacacggcaacggcttctcgaccaagagggttag
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