KEGG   Silurus meridionalis (southern catfish): 124378770
Entry
124378770         CDS       T08004                                 
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4
  KO
K03679  exosome complex component RRP4
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124378770 (exosc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smeo03019]
    124378770 (exosc2)
Messenger RNA biogenesis [BR:smeo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     124378770 (exosc2)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     124378770 (exosc2)
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N ECR1_N_2 Lantibiotic_a
Other DBs
NCBI-GeneID: 124378770
NCBI-ProteinID: XP_046694489
LinkDB
Position
25:complement(5153984..5158483)
AA seq 295 aa
MAVDMRLPARKQTCFPISNSSSDHKHLVVPGDVITSDTGFMRGHGTYMDDEKLTASVAGE
VERVNKLICVRPLKTRFNGEVGDVIVGRITEVCESKRWKVETNSRLDSVLLLSSVNLPGG
ELRRRSAEDELSMRDYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGILVQVSPSL
IKRQKTHFHNLTCGASVILGNNGYIWIYPTPGHHDEEAGGYYTSLEPVPLSDREVISRLR
NCLLALAAHKVMLYDTSILYCYESSLTHQIKDILKPETMDEIVMETRQRLLDQEG
NT seq 888 nt   +upstreamnt  +downstreamnt
atggcggtggatatgagattacctgcgagaaaacagacgtgttttccaatttctaattcc
agctcagaccacaaacatttggtagttccaggggatgtgatcacatcagacacagggttc
atgagaggccatggaacgtatatggacgatgagaaactcactgcttctgtggctggtgag
gtagaacgagtcaacaagctcatctgcgtgagaccactgaagacaaggttcaatggtgaa
gtcggtgatgtgattgttggtcggatcactgaggtttgtgaatcaaaacgctggaaagtg
gagacgaactctcgtctggactcagtattacttctgtcttcggtcaatcttcctggagga
gagttgaggaggcgatcagcagaagacgaactttccatgagagactaccttcaagaaggg
gacctcatcagtgcagaggtacagtctgtgttttcagacggcgccctctctctccacaca
cgcagcttaaaatacggaaagctgggtcagggtattctcgtgcaagtctcaccatcactc
atcaagagacagaaaacccatttccacaacctgacatgcggagcgtccgtaatattaggg
aacaacggctatatctggatttaccccaccccggggcaccatgatgaagaggcaggaggg
tattacacaagcctagagcccgttcctctctcagaccgggaagtcatttctagactgagg
aactgtttactggctctggcagctcacaaagtgatgctgtatgacaccagcatcctctac
tgctatgaatcatctctgacacaccagatcaaagacatcctgaaaccggagaccatggac
gaaatcgtgatggagacacggcaacggcttctcgaccaagagggttag

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