Silurus meridionalis (southern catfish): 124378934
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Entry
124378934 CDS
T08004
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
124378934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124378934
03036 Chromosome and associated proteins [BR:
smeo03036
]
124378934
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
124378934
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
124378934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
HDA2-3
Motif
Other DBs
NCBI-GeneID:
124378934
NCBI-ProteinID:
XP_046694743
LinkDB
All DBs
Position
25:16511181..16529897
Genome browser
AA seq
1770 aa
AA seq
DB search
MSAEVLRPVPGGSRSGGGKLGLLINKLHTYLAVSEEQTGENSLPGHWSGAMAKEFIEQQQ
AESRAVDEPSVSSSARSRRKPLVVTKHSGLNESDASSESGTEDVLSINSSEPDTTCLPKG
TVFVLPEPVSNEVRDEFRGPEFRSKRVKQNKDFSERRRGGSDIERVNCTACGQQVNHFQR
DSVYQHPALKVLICKSCFKYYMSDDISKDAEGMDEQCRWCAEGGSLIGCDYCSNAFCKKC
VLRNLGRRELSAILEEERKWYCYVCSPEPLMDLVLACDSVLQNLEKIWARKRAGVGGGAR
GKQRGGRGGAGAGFPMSSAPSRGLCDRMQRVVDMTTSLNRSFVDFMQSEKDEEVSEEEDV
DRARRLMMFRTILQDLRQAHTALQEALDRELYGGKREPQRQRAKPRQRKPRAPRGSCVTK
ELVVKLTPVPVETSGDPETNVDPGSVGATTVDMAETNTQMKEEENPGETETTEGTVDNTK
GPEETKAEEECEGKGGVAMEEENSDDEDEDDELEMAEENKRSPRVKMTPRRRRSDATHAG
LEEDSDSDEVPAVLLQTATAAMASSEEEGGVDSDGGAADPNQEVRKQCLFGLVKTTPPCQ
DRTSRKRKLKERSSSTSSSSSSSVVEVGDSGSKVRRTVGLPHKVTKTAADSESSSSDQEM
DSSDSDELDQKIKPLNDVALMGSGTFQQSSGDEVDTCPAPIVLDEDDVENRIAKQLLLAE
IRANLSSSSGQDDTSDAESKVEEDDEDKDDMKEGDGEKNDAEDSELTDNSSDSDSPARPS
LSRHRLLQCSVTLWEVASQDDGNKPDDKRPKRKKTQSSKISDSSDERDSASEDSALSEVI
SQSEDENASVLEDLVDDGEPRTPPPKDMGDGPTDGENAENCTGTPKGRRKIRKILEVQQL
AKETQEALREEEERRKRLAEREQQRRQEEKSKEHGREDPEVMIIARTPAARPIPLVLELD
DATRECLVEVDTQLLVKLKPHQRQGVQFMWDSCCESIAKVKVSPGSGCLLAHCMGLGKTL
QVITFLHTVLTSERVELKTALVVCPLNTVLNWRSEFDKWQRGIVKKKLEVMDLVKVKSVC
SRVNALTSWHRSGGVLILSYELYRMLINGDQGKYGKQQETLLRALQDPGPDVVVCDEGHL
LKNEATAICKAMRSIRTRRRIVLTGTPLQNNLSEYHCMVSFVKQNLLGSLREFRNRFMNP
IQNGQCADSTPSDVRLMKKRVHVLHELLAGCVQRRDYTVLMPFLPPKREYVLSIRMTPLQ
CRLYTHYLQNCTGEGVNTLFQDFQILSLIWTHPWCLQLSDHNRGNKGRVEEILSEIAETG
EVSEVTQPQNADERALAESRDPNLAKTSLEEERRVVNGSMAGWYREFVSDSDAKILEHSG
KLTLLMEILHCAEQQHEKVLVFSQSLVSLDLIETFLELANKAKIEAKSSVYKGKQMWVRN
KDYYRLDGSTTATARKKWAQEFNNVRNTRCRLFLISTRAGSLGINLVAANRVVVFDASWN
PVYDIQSMFRVYRFGQKKAVYIYRFLAQGTMEQKIYERQVAKQSLSSRVVDQQQIQRHFT
QSQLRELYHFQPDPCVQKHIVEPADKVLAVLLQCCGEAIVSFHEHDSLLGHRVEEELSME
ERKEAWEEYKLEETRVSAQDSGELWRKSNQELKAMLESGRMDPQKASQNIKPKCLEVMKL
DPMMDREKLKQKAVRTYERFKKDTQGRVEICQRQVFSQQKQILENRAGLSSSAPPSVSVS
SAYEAGGSSSAPPTPLVQSSQSNGSVNQPQ
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgaagtgctcaggcccgtgcctggaggcagtagaagcggtgggggtaaactg
gggctcctgatcaataagcttcacacgtacctggctgtttctgaagagcagactggggag
aacagtttacccgggcactggagcggtgcgatggccaaagagtttatcgagcagcagcaa
gcggaatcccgagctgtcgacgagcccagcgtttcctcctcagcccgttctagaaggaag
ccgttggtggtaaccaagcacagcggcctgaacgagtcggacgcgtcctctgagagtgga
actgaagacgtgttgtccatcaactccagtgaaccagacacgacctgcctgcctaaaggt
acggtgtttgtgttgccagagccggtgtctaacgaagtccgtgatgagttcagaggtcca
gaatttcgcagcaaacgagtgaagcagaacaaagacttttccgaaagacggagaggaggc
tctgacatcgagcgagtgaactgtacagcctgtggtcaacaagtgaaccatttccagaga
gactcggtctaccaacaccctgccctcaaagtgctgatctgcaagtcctgttttaagtac
tacatgagtgatgacatcagcaaagatgcagaggggatggacgagcagtgcaggtggtgt
gcagaaggaggcagtctgataggctgtgactattgcagcaacgcattctgtaagaagtgt
gtcctgaggaacctcgggcggcgggagctgtctgccatcttggaggaggaacgcaagtgg
tattgttacgtttgcagcccggagccgctcatggaccttgtgctggcctgcgactctgtg
cttcagaacctggagaagatctgggctcgcaaacgggctggggtagggggcggggctcgc
gggaagcaaaggggtggacgtggcggggcaggggcagggtttccgatgagctcggcgccc
tcgaggggtctgtgcgatcgcatgcagcgcgtcgtggacatgacgacatcgctgaaccgc
tcgttcgtggatttcatgcagagcgagaaggacgaggaggtgagcgaggaggaggacgtg
gatcgagcgaggagactgatgatgtttcgcaccatcctgcaggacctgcgccaggcccac
accgccctgcaggaagcactggaccgcgagctgtacgggggcaaacgggagcctcagaga
cagcgcgcgaaaccgcggcaacggaaacctcgggctcccagaggctcgtgcgtcacgaag
gaactagtggtgaagctgacccctgtcccagtagagacgtctggtgatcccgagaccaac
gtagaccccggctcagttggcgccaccactgtcgatatggcagagacgaacacgcaaatg
aaggaggaggaaaaccctggtgaaacggagacgactgaaggaacggtagacaatacaaag
ggaccagaagagacgaaggcggaggaggagtgtgaggggaaaggaggtgtggcgatggag
gaggaaaacagcgacgacgaagacgaagacgacgagctggaaatggcagaggaaaacaag
cgctcgccacgtgtcaagatgactccgcggagacggcgctcggacgcgacacacgccggc
ctggaggaggactccgactcggacgaagtgcccgctgtgctcctgcagaccgccaccgcc
gccatggccagtagcgaggaggagggtggggtcgacagcgacgggggcgcggccgaccca
aaccaggaagtcagaaagcagtgcctgttcggattggtcaaaaccacaccaccatgccaa
gatcgaacgtcacgcaagcggaaactgaaagagaggtcctcgtctacgtcttcgtcgtcg
tcgtcttcagttgttgaagtcggggattcggggtcgaaggtcaggagaaccgtaggtctt
cctcacaaggtcacaaagactgcagcagacagcgagagttcatcaagcgaccaggaaatg
gacagcagtgactcggacgagctggaccagaagattaaaccgctgaatgacgtcgcgctg
atgggttctggaacgttccagcagtcctctggtgatgaggtggacacgtgcccagccccg
atcgtcttggatgaagatgatgtggagaatagaatcgccaaacagcttctgttggctgag
atcagagcaaatttatcctccagctccggtcaggacgacacgtcagatgccgaatccaag
gttgaagaggacgatgaggacaaggacgatatgaaggagggagatggagagaagaatgac
gctgaagacagtgagctgaccgataacagctccgactcggacagtcccgctagaccctcg
ctgtctcgtcaccgcctcctgcaatgttccgtgaccctgtgggaggttgcgtcccaggat
gacggcaataaacctgatgataagaggccaaaaaggaaaaagacgcagtcgtccaaaata
tcagacagcagtgacgagcgagattcagccagtgaggattctgcactgagtgaggtgatc
agccaatcagaagacgagaacgccagcgtcctggaggacttggttgatgacggcgaacct
cgtacacctcctcctaaggacatgggtgacggccccacggacggtgaaaacgcagagaat
tgtacgggcacaccgaagggccgcaggaagatccggaaaattctggaggttcagcagctg
gcaaaagagactcaggaggcactaagagaggaggaggagaggaggaagaggctggctgag
agagaacaacagcgacgacaggaggagaagagcaaggaacacggacgagaggacccagag
gtgatgataatagctaggacccctgccgccaggcccatccctctggtgctagaacttgat
gatgcaacacgggaatgtctggtagaggtggacacacagctgctggttaaactcaaacct
caccaacgccagggtgtgcagtttatgtgggacagctgctgtgagtccatagcgaaggtg
aaagtgtctcctggttctggctgcctgctcgcccattgcatgggactcggaaaaacgctg
caggtgatcacttttctgcacacggtgttgacgtccgagagggtagagctgaagacggcg
ctggtggtgtgtcctctaaacacagtgctcaactggaggtccgagttcgacaaatggcag
cgtggcatcgtcaaaaagaaattggaagtgatggatttagtgaaggtgaagtcggtgtgt
tctcgtgtaaatgctctgacaagttggcacaggagcggtggtgtgttgatcttgagttat
gaattgtaccgcatgctcataaatggagatcaagggaaatatggcaaacagcaagagacc
ctactcagagctctgcaggacccagggcccgatgtagtggtgtgtgacgaaggccacctt
ctaaaaaacgaagcgaccgccatctgtaaagcgatgcgttccattcgcacacgccggcga
atcgtcctgacaggaacgccgcttcaaaacaacctcagcgagtatcactgcatggtgagt
tttgtgaagcagaacctcctgggttccctgcgcgagttccggaaccgtttcatgaacccc
atccagaacggccagtgcgccgactccacaccgtctgacgtgaggctgatgaagaaacgc
gttcacgtcctacatgaactcctcgctggatgtgttcagaggcgggattatactgttctg
atgcctttcctgccacccaagcgagaatacgttctgtccatcaggatgaccccactacag
tgcagactgtacacacactatctacagaactgcaccggagagggtgtgaacactttattt
caggattttcagatcctgagtctgatttggacacatccatggtgccttcaactctctgac
cacaatcgaggaaacaagggcagagtggaggagattctttctgaaattgcagagactggt
gaggtttccgaagtgacacagccacagaacgcagatgaacgagcattggcagagagcaga
gatcccaacttagccaaaacttcactagaagaggagcgcagggtggtgaatggatcaatg
gcgggttggtacagagagtttgtatctgacagtgatgcaaagatcctggagcattctggg
aaattgacgctgctgatggagatcctgcactgcgccgagcaacagcacgagaaagtgttg
gtgtttagtcagtcacttgtttcactggacctgattgagaccttcttggaattggctaat
aaggcaaagatagaggcaaagtccagtgtgtataaagggaagcaaatgtgggtacggaac
aaggactattatcgtctggacggttcaactactgctacagcccgcaagaaatgggctcaa
gagttcaataacgtcagaaacacacgctgcaggttgtttctgatctctactcgagctgga
tcattagggattaatctcgtagcagcgaatcgagtcgtcgtgttcgacgcttcatggaat
ccagtgtatgacatccagagcatgtttagagtgtatcgcttcggccagaaaaaagcagtg
tacatctaccgcttcctagcacagggaacgatggagcagaagatatacgagcgtcaggtg
gcgaaacagtctctgtcgtctcgtgtggtggaccagcagcagatccagcgccacttcaca
caaagccaactgagggagctgtaccacttccaacctgacccttgtgtccaaaaacacatt
gtggagcctgcggataaggtgctggcggtgctcctgcagtgctgtggggaggccatagtg
tcgttccatgaacatgattcactgttgggtcacagggtggaagaggagctcagcatggag
gagaggaaggaggcatgggaggagtacaagcttgaggagacccgtgtctctgcccaagat
tcaggagaactgtggaggaagagcaaccaagagctgaaggcgatgttagagagcggtcgt
atggatccacagaaagcttcacagaacatcaaacccaaatgcttggaagtgatgaaactt
gaccctatgatggacagagagaagctgaagcagaaagctgttcggacttatgagaggttt
aaaaaagacacacaaggcagggttgagatttgccagcggcaggtctttagtcagcagaag
cagattttggagaacagggcggggctcagcagcagcgctccaccctcagtgtctgtcagt
tcagcatatgaagcaggaggatcctcctcagccccgcccactccactagtccagagcagc
caatcgaacggctccgtcaatcagccacagtga
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integrated database retrieval system
