Silurus meridionalis (southern catfish): 124379003
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Entry
124379003 CDS
T08004
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124379003 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124379003 (prpf4)
Spliceosome [BR:
smeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124379003 (prpf4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
PRP4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
SDH_protease
Motif
Other DBs
NCBI-GeneID:
124379003
NCBI-ProteinID:
XP_046694938
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Position
25:3813299..3818875
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AA seq
507 aa
AA seq
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MSDEDEAPLVKKTRIYYGSIEEKEKERLARDGAGLSGKDAIKAAIEAGNINISSGESMEM
EERVSERQAEVLAEFERRKRARQITVSTDDTEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKDEEKAKRAKEDSQQTWYHEGPITLKEARIWLAKYSLPKAAERLNA
AHALREIPESTRTVRQQELHKTLRNLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWNIPDCSLVRTLRGHNTNVGAVCFHPQATLTLDESDVNMASCAADGSVKLWSLNSDEP
VADIEGHFMRVARVTWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFGRIWDLRTGRCVMFLEGHFREVYAIDFSPNGFHVATGSGDNTCKVWD
LRKRKCIYTIPAHQNLVSSVKFQPTDGHYLLTGAYDSMAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSYDRTFKLWVAD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaagcccctttggtgaaaaagactcgaatctactatggaagtatt
gaggaaaaagagaaggagcgtcttgcccgtgatggagccggtttatctgggaaggatgcg
attaaggccgcaattgaggctgggaatattaacatctccagtggggagtccatggagatg
gaggagcgtgtgagcgagcgtcaggctgaggtactggctgagttcgagcgcagaaaaaga
gcaagacaaatcacagtctctactgacgataccgaagtcaaagcatgcctgcgtgccctc
ggagagccgatcacgctgttcggcgagggccctgctgaaaggcgtgagagattgaggaat
attttgtccgttgtgggtccggatgctctaaagaaatcgaaaaaggatgaagagaaagcg
aagcgggccaaagaagactctcagcagacgtggtaccatgagggtcccatcaccctgaag
gaggcacgtatctggctggccaaatactcactgcccaaggctgcggagaggctgaacgct
gctcacgctttgagagagattcctgaatctacacgcactgtacgacagcaagagcttcac
aagacactcaggaacctgaataacttctgcagtcagatcggagacgatcgtccgatatcc
tactgccagttcagcccgaactccaaactattagtcaccgcatcatggagtggcctgtgc
aaactctggaacattccagactgcagcctcgtccgcacattaagaggtcataataccaat
gttggagcagtctgctttcacccacaagccacgctcactctggacgagtcagacgtcaac
atggcctcctgtgccgcagacggatctgttaagctgtggagtttaaacagtgatgagccc
gttgcagacatcgagggtcacttcatgcgggtggctcgtgtaacgtggcatccttctggt
cgctttctgggcacaacatgctatgataactcgtggcgtctgtgggatctggaggtccag
gaggagattcttcaccaggaaggccatagtaaaggtgttcatgacttgcatttccatccc
gatggctccttagcaggaactggcggtctggattcgtttggtcgcatatgggacctgagg
accggtcgctgtgtcatgttcctggaaggtcacttccgagaggtctacgcaatcgacttc
tccccgaatggctttcacgtggctacagggagtggcgacaacacatgtaaagtgtgggac
ctgcggaaacggaagtgcatttacaccatccccgctcaccagaacctggtgtcctctgtc
aagtttcagcctacagacggtcattacttgctaacgggtgcttatgacagcatggcaaag
gtgtggactcaccctggatggtctcctctgaagaccttggcaggacatgaagggaaagtg
atgggactggacctgtctcctgatggacagctcattgcaacctgctcatatgatcgcacc
ttcaaactatgggtggctgattga
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