Silurus meridionalis (southern catfish): 124379053
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Entry
124379053 CDS
T08004
Symbol
ungb
Name
(RefSeq) uracil-DNA glycosylase isoform X1
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124379053 (ungb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124379053 (ungb)
Enzymes [BR:
smeo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
124379053 (ungb)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
124379053 (ungb)
Prokaryotic type
124379053 (ungb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
124379053
NCBI-ProteinID:
XP_046695045
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All DBs
Position
25:10416031..10441630
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AA seq
284 aa
AA seq
DB search
MYLHDSCRVQKRFSAAYLTLLVELMSQEQKRCNGQKLTVEQLKQIEQKRCEAMRRLAAHN
DPMLIGESWHKHIETEFTKPYFTKLMTFVSEERKHFTVYPRKEQVFFWTNVCAFEAVKVV
ILGQDPYPRPGQAHGLCFSVPRPSPPPPSLENIFTELAIDIKDFQHPGHGDLTGWAKQGV
LLLNSVLTVRSREPTSHQDCGWEKFTDAVVQSLSRNLKGLVFLLWGSHAQRKGKFINRSH
HHVLETSHPSPYSAHMGFFGCRHFSKTNSILMASGKTPIDWNAL
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgcatgactcgtgcagagtgcaaaaaagattttcggcagcatatttaacactc
ctcgtggaactaatgtcccaagaacagaaacgttgcaatggccaaaagcttactgttgag
cagctgaagcaaatagagcagaagagatgtgaagctatgaggaggcttgctgctcacaat
gatcctatgctcattggagaaagctggcacaagcatattgagactgaattcaccaaacct
tattttactaagctgatgacatttgtcagtgaggagaggaaacatttcactgtctatcct
agaaaagagcaggtcttcttttggacaaatgtgtgtgcattcgaggctgtgaaagtggtc
atccttggacaagacccatatcccagaccaggtcaggctcatggtctgtgctttagtgtc
ccgaggccttcaccaccacctccaagtttggaaaatatattcaccgaactcgcaatagat
atcaaggacttccaacaccctggccatggggacctgacaggatgggctaaacaaggtgtt
ctacttctcaactctgttctgactgtgagaagcagagagccgacatcccaccaggattgt
ggatgggagaaattcactgatgctgtagttcagagcctaagtaggaatttgaaagggctg
gtctttttgctgtggggatcacatgctcaaaggaaaggcaaattcattaatagatcacac
catcatgtccttgagacaagccatccatcaccttactctgctcacatgggcttttttgga
tgcagacacttctcaaagaccaacagcatacttatggcatcaggaaagacaccaatcgat
tggaatgctctgtaa
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