Silurus meridionalis (southern catfish): 124379082
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Entry
124379082 CDS
T08004
Symbol
ncor1
Name
(RefSeq) nuclear receptor corepressor 1 isoform X1
KO
K04650
nuclear receptor co-repressor 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
124379082 (ncor1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124379082 (ncor1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124379082 (ncor1)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124379082 (ncor1)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
124379082 (ncor1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
Myb_DNA-bind_6
Cytomega_UL84
CCD97-like_C
LOB
Motif
Other DBs
NCBI-GeneID:
124379082
NCBI-ProteinID:
XP_046695110
LinkDB
All DBs
Position
25:complement(5735883..5823828)
Genome browser
AA seq
2422 aa
AA seq
DB search
MSSSGFPPSQGSFSSEQSRYTTHSVQYAYSSTRHPQEFAIPEYRNAHLQDQQQRRRPSLL
SEFHPGTESWSMLRRPPERRHGYEQQFHTVTAQLEHEAADAKRPRIEGSAEAHLARGQST
SIVLPIPHPIQDGLRTAGEIKKETQYSVKLEASSPGGGLQAMGDEQDASPSKLSKEELIQ
SMDRVDREIAKVEQQIFKLKKKQQQLEEEAAKPVEPEKPVSPPPVEHKHRSIVQIIYDEN
RKKAEEAHKIFEGLGPKVELVSVPLYNQPSDTKVYHDNIKTNQVMRKKLILFFKRRNHAR
KQREQKICQRYDQLMEAWEKKVERMENNPRRKAKESRTREYYERQFPEIRKQREQQERFQ
RVGQRGTGLSATIARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMYDSEQRRVKFINM
NGLMEDPMKVYKSRQFMNVWTEHEKEIFKEKFVQHPKNFGFIASYLERKCVSDCVLYYYL
AKKSQNFKTLVRRNYGRRRRNQQITRPSQEEKSEDKNEEEKAEKSDKKEEDDKKDEEEKD
EKEDTKDIGKDKEKCEGEDEEGKEQSTPRGRKTANSQGRRKGRITTRSMAIEAASTATEE
APAPPPPPPPPPPPEPVLLEPVPPPKPEPVPKPARELAKLAPVTPMDNQARGAVEAGETS
RWTEEEMEVAKKGLVEHGRNWSAIAKMVGTKSEAQCKNFYFNYKRRHNLDDLLPQSKQAS
RRLRERDASQCDSVATASADDDDENPDDSEGADNTSDTESAPSPSQSDTSKPSESQEAPD
QEATAPKVPNADTKAQEPFSELQVKLEKSPEGALVDESMVKDEAQLHPKSEPQDTEMAGV
ERGEVQVKTEPELREKEKQSEQPHSDNDSSATCSADEDIEAEPERHRFSLDKPSILGGSG
SVVVSSGKQAPLSMQELQQRAAAIPAMVSPPSSLLHFPSSSAPLARPRDWERLGHRVSPQ
PFRHVAGPYGAGVPVGAPLSGLTMFQQQIKAVHDSAHIEDNQRQEAGEIERRPRFITRSP
TIVDRDGKPYSYMPFDINLMEQEAHAAGRPGSPYRLSPREPSKASPQPEPNNPPRYSVPP
VLQPTPNQVVQTLQDGMRMPFTRHRPPNIPSPPPLIPTSKPSDKPTFIQGGSILQGTPGT
YLPSHTHAMYGPEGAKSAGGSISLGLPRQQDPAKPVSYIKQEECSPRGQSAQAEGLLSRA
QYEGVVRAGGPMPIIQDLARGSSGKGPEGLSLRAGSITHGTPALSQSSVPTELLKSKLTA
EDLSSPEKSRGDPLPKGHVIYEGKIGHIVSYDPIKNPREGTRSPRTGHELKRTYEIMDGV
RGHPGREAAPYEGLITRARDGPHPDSKERQILTGSIMQGTPRTAADAFDEAKYGKQIKRE
SPPIRSFEGGITKGKPYEGGNTIKEMGRSIHEIPRKEMLDSRKTPVLEGSITQGIPLKYE
NIGASQSAIKHNVKSLLTSPGKLEDSKVQERVRHTSVVSSTSVLRSTHQEASKAQLSPGM
YEDANARRTPNYTSGSISRGSPLLRAQEGGITSGKPVSHERKSTLTPTQRDSVPAKSPVS
GGEPMASHSPFDPHQVYRAHLPPHLDPSLFHHHPAAYMFQRQPSPTGYPSTYQLYTMENT
RQTILNDYITSQQMQVIPRADARGLSPREQQLTIPYPAGARGIIDLAQMPPTILLPHPGG
TGSPNLDRITYLPGTQPPFPPRVFNPASISPGHPAHLAASVERERERERERERERDREHR
EREKEREKERERERERERDRERERERERIAAANEYMRGASEQPGRPGSRGFLRSPSPSMR
SQEGVVQQRPSIFQGTKSVITPLIRQIPPATSAAQTSSRYNTAADALAALVDAAASAPQM
EVSKIKEGKHEGAGGREGEASPSRAMSFPAGKAPLPVYPDGGSTATGSKDKAPATKSRIE
EELRTLGKTTITAASFIDVIITRQIASEKDSRERGSQSSDSSGSMSSSRYDGQSSGAIEV
ISPASSPAQREEKNDRSFSSEKSTHSATGTVRGFDIARLRQQVESGPPAAPPPPTQTHRV
MTLADHISHIITQDFAKNQDPPPSSSSSSSSISSTFQNSGTASSSARSKVPNRYSPENPL
NHAHHQKPPSRVSPENSSEKSRSRPGKSPERAGGRAVESYEPISPPQNYSGLEKQDSSLL
QNQRREQDIAEQRTDSRSPSSGNYLPAFFTKLESTSPMVMSKKQEIFRKSEVGNAQPGTE
IFNLPAVTTSSNVNLRNHSFSDPASNLGLEDIIRKALMGTVEERPEEQTQQAQSGASAAG
NNSDGRQEANPSPSTGRYSAKQKLQSKTSSRKSKSPNPGQAYAGGERPSSVSSVHSEGEY
HRQAPSWAWEDRPSSAGPMQFPYNPLTMRMLSSTPPTSMACPSPSMQSQQPPGGGANAPA
RAWEREPPLLSEQYETLSDSDD
NT seq
7269 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagctcgggctttccccccagtcaggggagcttcagcagcgagcaaagccgctat
accacccactcagtccagtacgcgtacagttctacacgccatccacaggagtttgcaatt
ccagagtaccgcaatgctcacctgcaggaccagcagcagcgtcgccgaccctcattgctg
tcagaattccaccctggaacagaaagctggtccatgttgcgcaggcccccggagcgccga
catggctacgagcagcagttccacacagtcacggcccagctggagcacgaagccgcagac
gccaagcgtccacgcatcgagggctccgcagaagcccacctggcccgcggccagtccacc
agcatcgtcctgccgataccacaccccatccaggacggcctgagaaccgcaggagagatc
aagaaggaaactcagtacagtgtgaagctggaggcctcgtccccaggaggagggcttcag
gccatgggggacgagcaggacgcgtctccttccaagctctccaaagaggagctaatccag
agcatggaccgcgtggaccgcgagattgccaaggttgagcaacagatctttaaactgaag
aagaagcagcaacaactggaggaggaagcagcaaagccagtggagccggaaaagccagtg
tctcctccccccgtggaacacaaacaccgcagcatcgtccagatcatctatgacgaaaac
cggaaaaaagcagaggaggcccacaagatctttgaaggactcggccctaaagtagagctg
gtgagtgtgcctctgtataaccagccgtcagatactaaagtgtaccacgacaacattaag
acaaatcaagtgatgaggaagaagctgattctgtttttcaagaggaggaaccacgcgcgc
aaacagagggaacagaaaatctgccagcgctacgaccagctgatggaggcgtgggagaag
aaggtggagcggatggagaacaacccgcggcgcaaggccaaggagagtcgcacacgcgag
tactacgagcgccaatttcccgagatccgcaagcagcgcgagcagcaggagcgcttccaa
agggtgggacagagagggacggggctgtccgctaccatcgcgaggagcgagcacgagatc
tccgaaatcatagacggcctctcggaacaagagaacaacgagaagcagatgaggcagctg
tcggtcatccctcccatgatgtacgactcggagcagaggcgcgtgaagtttatcaacatg
aacgggcttatggaagaccccatgaaggtctacaagtctcggcagttcatgaacgtctgg
accgagcatgagaaggagatttttaaggagaagtttgtgcagcacccgaagaacttcggc
tttattgcttcttatttggaacgaaagtgtgtctcagattgtgtactgtattactatttg
gccaagaagagccagaactttaagacactggtccgacgtaattatggcaggaggcggagg
aaccagcagataacacggccctcacaggaagaaaagtccgaggacaagaacgaggaggaa
aaggcagagaaatccgacaagaaagaggaagacgataagaaggacgaggaggagaaagat
gaaaaagaggacacgaaggacattggcaaagacaaagagaagtgtgaaggagaggacgag
gaagggaaggagcagagcacgccacgcggccgcaagactgctaacagccagggacggcgt
aaaggccgaatcacaacacgctctatggccatcgaagcggctagtactgccacagaggaa
gcaccagcaccaccccctcccccaccaccgccaccaccacctgagcctgttttactggag
cctgtccctccacccaaaccagagccggtgccgaagccagcacgtgaacttgctaagctc
gctcctgtgacccccatggacaaccaagcacgaggagctgtagaggctggagagacatct
cgctggacagaggaggagatggaggttgccaaaaaagggctggtagagcacgggaggaac
tggtcggccattgctaaaatggtgggcactaagagtgaggcgcagtgcaagaacttctac
ttcaactacaagaggcgacacaacctggacgacttgctgcctcaatccaaacaggcatcc
agacggctgcgcgagcgagacgcgtctcagtgcgacagcgtggccacggcttcggccgat
gacgacgacgagaacccagacgacagcgaaggtgcagataacacttcagacacagagagc
gcgccgtctccttctcagtctgacacgtccaagccctcagagtcacaagaagccccagat
caggaagctactgcacctaaagtccccaatgcagataccaaagctcaggagcccttcagc
gagctgcaggtaaagctggagaaaagtccagaaggagcgctcgtggacgagtccatggtt
aaggacgaggcccagctgcatcccaagagcgaacctcaggacacagaaatggcgggcgta
gagcggggagaggtgcaagtgaagaccgagccggaactgagggagaaggagaagcagagc
gagcagccgcattcggacaacgactccagtgccacctgcagtgctgatgaagacattgag
gcagagccagaaagacacaggttttctctggacaagccttcgattctcggaggctctggg
tcagtggtggtatcctcgggcaagcaggctccgctcagtatgcaggagctccagcagcgt
gctgccgccatccccgcaatggtcagtccccctagttcccttcttcacttccctagcagc
tctgcccccctggccaggcccagggactgggagaggctcgggcacagggtctcgccccag
ccattccgccacgttgctggtccgtatggagctggtgttcctgtaggagctcctctgagt
ggcttgaccatgttccagcaacaaatcaaagctgtccacgattcagcgcacatcgaggat
aaccaaagacaagaagccggagagattgagcgtaggccacgattcatcactcgcagtccc
actattgtagaccgcgatggtaagccgtactcctacatgccattcgatataaatctgatg
gagcaggaggctcacgctgcaggaagaccaggttccccctacagactgtctccccgagag
ccgagcaaagcatcgccccaacccgagcccaacaacccccctcgctacagcgtccctcca
gtcttgcagcccacacctaaccaggtggtccagacccttcaagatggaatgcgtatgccg
ttcacccgccacaggccccccaacattccgtccccgcctccgctcatccctacgtccaaa
ccctcggacaagcccaccttcattcagggaggatctattttacagggaactccaggcacg
tatcttccctctcacactcacgccatgtatgggccagagggagctaagagcgctggagga
tccatctctctgggcctgccaagacaacaggaccctgccaaacctgtgtcctatataaag
caggaggaatgttcaccacgtgggcaaagtgctcaggctgaagggctgctctccagggca
cagtatgaaggggtagttcgagctggagggccgatgcccatcatccaggacctggcaaga
gggtcttctggaaaaggcccagagggactgtccttaagagcaggatccatcacacatggc
acgccagctctttctcagtccagcgtacccacggagctgctgaagagcaagctgacagcc
gaagacttgagcagcccagagaagagccggggcgatccactgcctaaaggccacgtcatc
tatgagggcaagattggccacatcgtgtcctatgaccctattaagaaccccagagaagga
acccgaagccccaggacaggacatgaattaaaacgcacgtacgaaataatggacggagtc
agagggcatcctggaagggaagcagcaccttatgaaggtttgattaccagagctagagat
ggtccacaccctgattccaaggagagacaaatactgactggctccatcatgcaaggaacg
cccagaaccgccgctgacgcgttcgatgaggccaagtacggaaagcagatcaagagagaa
agtccaccaattcgatcctttgaaggaggaatcactaaaggaaaaccgtatgagggtggg
aacaccattaaagagatgggacgctccattcacgagatcccccgcaaggaaatgctggac
agccgcaagacccccgttttggaaggctccattacccagggcatccctctgaagtacgag
aacattggcgccagccagtcggccatcaagcacaatgtcaagtcgcttctcaccagccca
ggcaagctggaggactcgaaagttcaagagcgcgtgcgccacacgtcggtcgtcagctct
acgtcagtgctgcgctccacacaccaggaggccagcaaggctcagctcagcccaggaatg
tacgaggacgcgaacgcccgcaggacccccaattacaccagcggctccatctccagagga
tcgcccttgctgcgggcacaagagggaggcataacttctggaaagcctgtgtcccatgag
agaaagagcacgctgacaccaactcagagagacagcgtcccagccaagtctcctgtatcc
ggaggcgagccaatggcctctcacagcccatttgacccccatcaggtgtacagagcccac
ctgccccctcatttggaccccagtcttttccaccaccacccagcagcttacatgttccaa
cggcagccatcccccacgggctaccccagcacttaccagctgtacaccatggaaaacaca
cgccagacaatcctgaatgactacatcacctcacagcaaatgcaggtcatcccacgggct
gacgccagaggcctgtcgcccagagaacagcagctcaccatcccataccctgctggagcc
agaggtataattgatctagcccagatgcctcccaccatcctgttgcctcaccctgggggg
acaggttcccctaacttggaccgcatcacgtacctccccggaactcagcccccttttcct
cctagggttttcaacccagcctccatatctccaggacacccggcgcatctcgccgccagc
gtggagagggaaagggaacgagaacgcgaaagagagagggaaagggatcgcgaacaccga
gagcgcgagaaagagcgggagaaggagcgcgagagggagagagagagagagcgggatcgg
gaacgggagagggagcgtgaacgcatagcagctgctaacgaatacatgcgcggagcttca
gagcagcctggtcggcccgggagccgtggattcctgcgttccccttctccttcgatgagg
tctcaggagggtgtagtccagcagaggcctagcatcttccaggggactaagagtgtcatt
acgccactgatcaggcagataccccctgcgacatcggcagctcagacttcatcgcgctac
aacaccgccgcggacgcattggccgcgctggtggatgctgcagcttccgcgccccagatg
gaggtatcgaagatcaaagagggtaaacacgagggcgccgggggccgcgagggcgaggcg
agcccctcacgagccatgtcgtttcctgctgggaaagcaccacttcctgtatatccagac
ggaggaagcacagcaacaggcagcaaagacaaagcacccgccaccaagtcgcgcatagag
gaagagctgcgcacgctcggcaagaccaccatcaccgccgccagcttcatcgacgtcatc
atcacgcgtcagatcgcgtcagaaaaggactcgcgcgagaggggatcgcaaagctccgac
tcctcagggagtatgtcatcgagccgttacgacggacagagtagcggagccatcgaggtg
atcagcccggcaagttccccggctcagagagaggagaagaacgatcggtcgttctcttct
gagaagagcactcattcagctacaggtactgttcgaggatttgatattgctcgcttgagg
cagcaggtggaatcgggacccccagcagccccacctcctcctacacagactcaccgtgtc
atgaccctggctgaccacatctcgcacatcataacccaggactttgcaaagaatcaggac
cctcccccttcctccagctcttcctcttcctccatttcctctacattccaaaactctggc
acagcaagcagcagtgctcgttccaaagtgcctaaccgctacagtccggagaacccgctg
aaccacgcccaccatcagaaaccacccagccgagtgtcccctgagaactcctcggagaaa
tccagatccaggcccggcaaatcccccgagcgtgccggtggccgggctgtcgagagctac
gaacccatctcccctccacaaaactactcagggctggagaaacaagacagcagcctgctg
cagaaccaaaggcgtgaacaggatattgcagagcaaagaacggactcgcgctccccgagc
agtggcaactatctgcctgccttcttcaccaagctggagagcacctcccccatggtgatg
tctaagaaacaggagatcttccgcaagtctgaagttggtaatgcacagccaggcacagag
atctttaatttaccagctgtaaccacctcaagtaatgtgaaccttcggaaccactcgttc
agcgacccagccagcaaccttggtctagaggacataatccgtaaggctctgatggggact
gtagaggagcgaccagaggagcagacccagcaagctcaatctggagcttcagcagcggga
aataactcagatgggcgacaggaggcaaatccgtcgcccagcacaggtagatattcggcc
aagcagaagctccagagcaaaaccagcagtaggaaatccaaatcgcccaacccaggccag
gcgtatgcgggcggagagcgaccctcctctgtgtcctctgtacattctgaaggagaatat
cacaggcaggctcccagctgggcttgggaagaccgtccctcatccgcaggtccaatgcag
ttcccttacaaccctctaacgatgcgcatgttgagcagcacgcctcccacctccatggct
tgcccctctccatcaatgcagtcccagcagccaccaggaggaggggccaacgctccggct
cgcgcctgggagagagagccgccgctgctctcggagcagtatgaaactctctcggacagt
gacgactga
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integrated database retrieval system
