Silurus meridionalis (southern catfish): 124379224
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Entry
124379224 CDS
T08004
Symbol
zgc:163098
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein
KO
K12842
U2-associated protein SR140
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124379224 (zgc:163098)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124379224 (zgc:163098)
Spliceosome [BR:
smeo03041
]
Complex A
U2 snRNP components
U2 related factors
124379224 (zgc:163098)
Complex B
124379224 (zgc:163098)
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Paralog
GFIT
Motif
Pfam:
Surp
RRM_1
cwf21
CID
CTK3
RRM_7
SPT2_N
SET_assoc
Motif
Other DBs
NCBI-GeneID:
124379224
NCBI-ProteinID:
XP_046695381
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Position
25:15393632..15403921
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AA seq
887 aa
AA seq
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MADKKSKPAAVKRVLTKKEQEEIKKKEEEKAAEVFEEFLASFDSSEKSNVKTFVRGGIVN
ATKDEEAAEVKKSKLYRPASKFSSSPQNVSPSSAESKRSAVKKKAEEKKKSNLELFKEEL
KQIQEEREERYKRKKNDPGGAHTDLDLPLTRRSIFDDDPTVPTTTNLYIGCINPKMTEEM
LCKEFGKYGPLASVKIMWPRTEEERTRVTNRGFVAFMTRKDAERALAALDGKTVMGFEMK
LGWGKAVRIPPQPLYTPVGVLKPTAPPPPSGLPFNAQPRDRFRNDFSKSRGRTSDDFYKT
LYDAVVTVVIPSERNLLCLIHRMIEFVVREGPMFEAIIMSREKNNPDFRFLFDNKCQEHV
YYRWKLFSILQGENLNEWKTSLFRMFRGGSLWRPPVLNPYLHGDEEPEVEPTVCQEEELK
KGQLKPEHREQLEVLLRGLTPRRVEIGDAMLFCLERAEAAEEVVSCISESLSMIQTPLQK
KVARLYLVSDILYNSSAKVSNASYYRKYFESKLPQIFCDMGEAYRNIQARLQAEQFKQRI
MTCFRAWEDWAIYPESFLIQLQNIFLGLIKPGEELPERTEAASPDLDGAPLDGVPLDGIE
LDGTPLDDLDGSPMAWDPSAIDGVPVDDIDGVPLGPVLDDIDGVPLDDGLDKTLPSIALS
KWERVDDVEHSAKSNSDDEKSASGVKENEADSEDDSSSDDDEAASPSRFEGAEFKSSLRN
FEMSESKRTRLRELEVKVMNFQDELESGKRQKKSHMSLQQQVQHYRNKLLQKEFDKDEEE
KREKPSSKQKDKVKKEERRDRAEDKSKGKERDRERDKDRDRERSKKSEDRERSRGRSREE
EDKRERTRSRSPRKSKRSRSPSPQRRSRRSSSRSPHRSHKKSKKSKH
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaaaaagcaagccggcggctgtgaagagggtgctgacgaaaaaggagcag
gaggagatcaagaaaaaggaggaagagaaggccgcggaggtgttcgaggagttcctggca
tcgttcgatagcagtgagaaaagcaacgtgaagacgtttgtgcgaggagggatcgtcaac
gccactaaagatgaggaggcagcagaggtgaagaagagtaaactctacagacccgcctcg
aaattcagttcctcaccccagaatgtttcgccctcgtctgcagagtccaaacgatccgcg
gttaaaaagaaggctgaggagaagaagaagagtaacctggaactatttaaagaggagctc
aagcagatacaggaggagagagaggagcgctacaaaaggaagaagaacgacccgggagga
gcgcacacagatctggaccttcctctaacacgccggtcaatattcgatgacgatcccact
gtacccactacaaccaacctttacatcggctgcatcaaccccaagatgacggaggagatg
ttgtgcaaggagttcgggaaatacggcccgttagccagcgttaagatcatgtggcctcgc
acggaagaagaacggactcgcgtgaccaaccgcggctttgtggctttcatgacgcggaag
gatgcagaaagagcgctggctgctttagacggtaaaacagtaatgggctttgagatgaag
ctgggttgggggaaggctgtgagaatcccaccacagcccctgtacactcccgtaggagtg
ctgaagcccacagcgccgcctcctccctcaggcctgcccttcaacgcccagccccgagat
cgcttccgtaacgacttctccaaatcccgcggccgcacgtctgatgacttctacaagact
ctgtacgacgccgtagtgacagtggttatcccatcagaaaggaacctgctgtgcctcatc
cacaggatgattgagtttgtggtgagagagggacccatgttcgaggccatcatcatgagt
cgagagaagaacaacccagacttcagatttctgtttgataataagtgtcaggagcatgtg
tactacaggtggaagctcttctctatactgcagggtgaaaatctgaacgagtggaagacg
tcgctgttccgaatgttccggggcggctctctctggaggccccctgtcctcaatccctat
ctccatggagacgaggagcccgaggtggagcccaccgtttgccaggaggaggagctgaag
aaagggcaactcaaacccgagcacagggagcagttggaggtgttactgaggggtttaacc
ccccgtagggtggagatcggtgatgccatgctcttctgcctggagagagcggaggctgca
gaggaggtggtgtcctgcatctctgagtcactctctatgatacagacaccactgcagaag
aaggtggcgaggctttatctagtgtcggacatcttgtacaactccagcgccaaagtctcg
aacgcttcctactaccgcaaatactttgagtcgaagttgccgcagatcttctgcgacatg
ggcgaggcgtaccggaacatccaggccaggctgcaggccgagcagttcaagcaaaggatc
atgacttgctttcgcgcctgggaggactgggccatctatcccgaatcctttctgatccag
ctgcagaacatcttcctggggctcatcaaaccgggagaggaactgcccgaaaggacagag
gctgcttctcccgatcttgacggcgctcctttagacggagtccccctggacggcatagaa
ctggacgggacgccgttagacgacctggacggatcccccatggcctgggatccatcggcg
atcgacggcgtccccgtggacgacatcgacggcgtcccgctcggccccgtgctggacgac
atcgacggcgttccactggatgatggcttggacaagacgttacccagcattgctctgtcc
aagtgggagcgagtggacgacgtggaacattccgcgaagtccaactcggatgacgagaag
agcgcgagcggcgtgaaggagaacgaagccgactccgaggacgacagcagcagcgacgac
gacgaagccgccagccccagcaggttcgagggggcggagtttaaaagcagcctgcgcaac
tttgagatgtcggaaagcaagaggacgcgactcagagagctggaggtgaaggtgatgaat
tttcaggacgagttggagtcggggaagaggcagaagaaatctcacatgagccttcagcag
caagttcaacactacagaaacaaactgctacagaaggagttcgataaggacgaagaggaa
aagagagagaagccttcgagcaaacagaaggacaaggtaaagaaggaggagcgaagagac
cgagcagaggacaagagcaaagggaaagagagggacagagagcgggacaaggaccgagac
cgggagaggagtaagaagagcgaggaccgagaaaggagcagggggcggagccgggaagag
gaggacaagagggagaggacgaggtcacgttccccacgcaagtccaagcgttcccgctct
ccatctccacagcgccggtccagacgctcctcatcccgatctccacaccgctcgcacaag
aaatccaagaagagcaaacactga
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