Silurus meridionalis (southern catfish): 124379386
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Entry
124379386 CDS
T08004
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43 isoform X1
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
124379386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124379386
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124379386
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124379386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_5
zf-RING_UBOX
FANCL_C
Motif
Other DBs
NCBI-GeneID:
124379386
NCBI-ProteinID:
XP_046695666
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All DBs
Position
25:6474045..6572535
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AA seq
802 aa
AA seq
DB search
MRLAAQRLAGLWPWLITAALQVALGHAGLEVEATRALIKVTLLNPKATVRPITLEGVFAG
SSSGIAEGKLMQSHPLSLCNTSEDERQESFFISIVKLESPESKVPQCLPLLEKAQLALNR
GAQAVIFDITDNVHAANELNSGYLKKPVVMVKAADAEELMRLVNKNEEAKVEINFMMETP
KWPQYEVGILLTVVLVVLSIIMIFAFRSRCRSNRTWDSVHQQTMRAISRLETRTYSSQGC
SGGSHHSRGGQGSNSSSSSGPMCAICLEEFLDGQDLRIISCAHEFHKECVDPWLLQHRTC
PLCMHNIMAGSEPSGRRPQRTRGHPRPEHSQAFLHPHPQHYSASHSFPQHPIPFSLRPNY
PRTLSGPYPQLGAYGGSPSYHTRFLSTSCSYHLSAEGHRARPRHSCRNVGHHYTSPRRPC
HHCHANRTRHQNHHQNLRHGGSQGCQDEGSCSGASYGTERSGYFPEGPGSDSSSGPCHGS
SSDSVLNCTDVSLQGVYGSCSTFRSSLSSEYDPFVYHSAGSEGPTGSIRPRSLDSGVNQT
NGGHGFEEPQQQQAVFSHVHYHRHRHHYYEEGEPSQGPGRGSDEDQGTAGGEAAGNSPMS
KDSTLCQGAHVACHCPKTDSIDRCGPPGGMEDRDPAPPSPSSSLPATSVLNPAPACCHPG
HPHCQKNTPCSLEASVPPMTAVHFHQRVNLQDDCSIHIHYGQSPAGYCCPPPLGATSTLL
PVPVILDSGGLSEWPCCRGARRGWQKQVQQAHSEPQLIGTGTVLDTPLCRGHHSAGHELP
TDICLYCQSVRNNQGSEEESGV
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaggctcgccgcacagcgcctggccgggctttggccgtggctgatcacggctgccctg
caggtggcgctgggccatgcgggcctggaggtggaggcgacccgcgccctcatcaaggtc
acgcttctcaaccccaaagccacggtcaggcccatcaccctggaaggggtgtttgctgga
agcagcagcggaatcgctgagggtaaactcatgcagtctcacccgctgtctctgtgtaac
accagtgaggatgagcggcaagaaagcttcttcattagcattgttaagctggagagtcca
gagagcaaagtgccccagtgcctcccactcctggagaaggctcagctggcgctaaacagg
ggagctcaggctgtcatttttgacatcactgacaatgttcacgctgctaatgagttgaac
tctggctacctgaagaagccagtggtgatggtgaaggcagcagatgctgaggagctgatg
agactggtcaataagaatgaggaggccaaggtcgagatcaacttcatgatggagacacca
aaatggcctcaatatgaagtgggaatcctcttgacagtcgtcttggttgtgctgtcaatc
attatgatctttgcctttcgctctcgctgcaggtctaaccgaacttgggactcggtgcac
cagcagaccatgcgggctattagcaggctggagacacgtacttacagctctcagggctgc
tcgggaggatcccatcattcacgtggtggccaagggtcaaacagcagttccagctctggg
cctatgtgtgccatctgcctcgaggagtttctggatggacaggacctgagaatcatctca
tgtgcacatgagttccataaggagtgtgtcgacccttggctgcttcagcaccggacctgt
ccactttgcatgcacaacataatggcaggttcagagccaagtggccgtcggcctcagaga
actcgaggacatcctcgtccagagcacagccaggcttttcttcacccacacccacaacat
tactcagcttctcattcttttccccagcaccctattcctttctctctacgaccgaattac
cctcgcaccctttcgggaccctatccccagctgggagcctatggtggctccccatcctac
cacactcgcttcttaagcacgagctgcagctatcatctttccgctgaagggcaccgtgcc
cgacctcggcacagctgccgcaacgttgggcaccactatacatcgccacgtcgtccgtgc
catcactgccatgctaaccggacacgacatcaaaaccatcaccaaaacctccgtcacgga
gggtctcaggggtgccaggatgagggcagctgttcgggggccagctatggcacggagcgc
agtggctacttccctgaaggacctggcagtgactcaagttcaggcccatgccacggctca
tccagtgactcagtgctcaactgcaccgacgtaagcttgcagggtgtctatggcagctgc
tccacctttcgtagttcactcagcagcgagtatgacccatttgtctaccacagtgccggt
tctgaaggtccgacaggtagtatcaggcctcgatctctagattcaggagttaatcagact
aatggaggacatggatttgaagaaccacagcagcaacaggctgtattcagccatgtgcac
taccatagacacagacaccactattacgaagagggcgagcccagccaaggaccaggacga
ggctctgatgaagatcaagggactgcgggaggagaagcagcaggcaattctcctatgagt
aaagactcaactttgtgtcagggggctcatgttgcctgccattgccccaaaacggactct
atagacaggtgtggaccacctggtggaatggaggatcgggacccagctcctccatccccc
agttcttccttgcctgccacctcagtgctgaaccctgcaccagcctgctgccacccaggg
cacccacactgccaaaaaaataccccctgcagtctggaagcttctgtcccacccatgacc
gctgtgcacttccatcaaagagttaatttacaggatgattgcagcatccacattcactat
gggcaaagtcctgcaggttactgctgcccccctcctttgggtgcaacatccacactgctg
cccgtaccagtaatcctggactcaggcgggctgtcagagtggccctgctgcaggggggca
cgaagggggtggcaaaagcaggtgcaacaggctcactctgagccacagctaatagggacc
ggcactgtattggacacacctctgtgcagagggcatcacagtgctgggcacgagctgccc
acagacatctgtctctactgccaaagtgtacgcaataatcagggatcagaggaagagtct
ggtgtatga
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