Silurus meridionalis (southern catfish): 124379422 Help Entry 124379422         CDS       T08004                                  Symbol sympk Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism smeo  Silurus meridionalis (southern catfish) Pathway smeo03015   mRNA surveillance pathway smeo04530   Tight junction Brite KEGG Orthology (KO) [BR:smeo00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     124379422 (sympk)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04530 Tight junction     124379422 (sympk)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:smeo03021]     124379422 (sympk)    03019 Messenger RNA biogenesis [BR:smeo03019]     124379422 (sympk) Transcription machinery [BR:smeo03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      124379422 (sympk) Messenger RNA biogenesis [BR:smeo03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      124379422 (sympk)     U7-dependent histone pre-mRNA processing factors      124379422 (sympk) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N GNC1_N PDS5 Rep_Org_C Motif Other DBs NCBI-GeneID:  124379422 NCBI-ProteinID:  XP_046695724 LinkDB All DBs Position 25:complement(12827258..12837279) Genome browser AA seq 1241 aa AA seqDB search MDSSSGEKQRGSVASQFLTRTEDAAIDMTTNEKVVDLLNQAALMATDDKLTALKQVQELI INKDPSLLDNYLDEMLAFQNDKSIEVRKFVIGFIEEACKRDNELLLKLLGNLNMVLRDDS VNVVKKAILTLTQLYKVTLQWLLRMKTISDVQEGCWDMVTQMKGEVLALLDSDNDGVRTH AIKFTESLIITLSPRTSDSDVPKKQEGDISLDKVPKDHSYIHYDVLCEEGKSALEQLLKF MVHPAISSINLTTALGSLATLARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKSLK LHLVSVLRHQSSVDFHSQISTLLLDLGMAQSEITRCIPAATQVRKRPRHEPYSEGKRIKM EPALIEDDDDKEEPVPIITPKPLATTGTQSAIDITAEFLLPLLTPENVANLVLISMVYLP DNMPASFQATYTPVESAGTDSQIKHLARLMATQMTSGGLGPGLEQCKARDEEGKEGEADA AVAETSSKDPIIIRKVSAVSLGQAISVVGSYKSEAMEETPQAKKLPEPILPSTQPKAPGS SGRKKVFRLADVVQPLSDTQLEKLTSMAVRRILQSEKAIARTGMSHVRVKLLARLITQFE GAMKDDMLRFILEDIRNRIDLAFALLYQEYNQYLSQVPSGSLESYEHCLFTLLSGLQERP EQRDGLFNKLVLEAPLITESALEVIRRYCEDESRVYLGMPTLKDLILKRPSRQFQYLHVL LDLSSHEKEKVRSAALNIIKWMYEKDHLRDYIEKFALNYMQLLVHPNPPSLLFGVGEDTE VAAPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMN SPDLLLLVENCPKGAETLVTRCLHILTDKVPPSPDLVERVRDLYHKRVPDVRFLIPVING LEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGELLIALHNIDSTKC DMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVM NILTRLIPKQVWKYPKVWEGFVKCCQRTKPQSYTVLLQLPPAQLSSVFERCPEMREPLLQ HVRSFTPHQQAHIPSSIMAILEANSRMPEPEPPQQEPEHIKVQEERELHTQQFMRPITQV ETRAPIVVAAPPELVPESVVRREEIEEPMEEGEAGSERLEIATEATTQMETPEIESASTS VPQETAEEPMETTITEPAENQQKEVVEEQGPEPETQANDPE NT seq 3726 nt NT seq  +upstreamnt  +downstreamnt atggattcaagctctggagaaaagcagcgtggcagtgtggcgtcacagttcctcaccagg acagaggatgcggctatagatatgactactaatgaaaaggtcgtggaccttctgaaccag gccgctttaatggccaccgatgataaactcactgctcttaagcaggtgcaagagctgatt attaataaggatccttcattacttgacaattacttggatgagatgctagcatttcagaat gacaaatcaatagaagtgaggaaatttgttattggtttcattgaagaagcatgtaaaagg gacaacgagctgttactaaagctgttggggaatttgaacatggtgttgagagatgatagt gtaaacgttgtgaagaaggccatcctgacgctcactcagctttacaaagtgacactgcag tggctactgcgcatgaagactatctcagacgtgcaggagggatgctgggacatggtgacc cagatgaagggggaggtcctggctctgctcgactcggataacgacggcgttcgcacacac gccatcaaatttacagagtcgctaatcatcacgctgtcgcctcgcacctccgattcggac gtccccaagaagcaggaaggggacatcagcctggacaaagttcctaaggaccattcatat attcactatgatgttctgtgtgaagaaggcaagtcagctctggagcagctcctgaagttc atggttcacccagccatctccagcattaatctgaccacagctctgggctcactggccact ttggctcggcagagacccatgttcatgtccgaggtcattcaagcttatgagactctacat gccaacctgcccccaacgcttgccaagtcgcaggtgagcagcgtgcgcaagagcctcaag ttgcacctggtgtccgtgctgcggcaccagagcagcgtagacttccacagccagatctcc acactcctgctggatctgggaatggcccaaagcgagattacccgctgcattcctgccgcc acacaggtccgcaagagaccgcggcatgagccttacagcgagggcaagaggatcaaaatg gaacccgctctgattgaggatgatgacgataaagaggagccggtacccatcatcacaccc aagccattggccaccaccgggacgcagtctgctatagacatcacagcagagttcctgctg cctctgctcactccagagaacgtggccaacctggtgctcatcagcatggtttacctgcca gacaacatgccagcctccttccaagctacttacacacctgtggagtcagcaggcacagat tcccaaatcaaacatctggccaggctcatggccacgcagatgacctcagggggacttgga cctggtctggagcagtgcaaagcccgcgatgaagaaggaaaggagggtgaggccgacgct gccgtggcggagaccagctctaaagaccccattatcatccggaaagtgtcagctgtgtct ctgggccaggccatctccgtagtggggtcctacaagagtgaagctatggaggagacgccc caggccaagaaactcccagaacccattttgccttctacacagcccaaagcaccggggagc agcggaagaaagaaagtcttcaggttggctgatgtggtccagccgttgtccgacacccaa ctggagaagttaaccagcatggctgtccgacgaattctccaatctgaaaaggcaattgca agaactggaatgtcccatgttcgtgtaaagttgctagcaagattgatcactcagttcgag ggtgcaatgaaggatgacatgctgcgtttcatcctggaggatatccggaaccgcatcgac ctagctttcgctcttctctatcaggagtacaaccagtacttgagccaggtgccatcaggc tctctggagagctacgagcactgcttgttcacgctgctttcaggcttacaggagcggcct gaacagagagacgggctcttcaataagttggtgcttgaggctcctctgatcacagagtca gcgctggaggtgatccggcgctactgtgaggacgagtctcgtgtttacctcggcatgccc actctaaaagatctcatcctgaaacgcccctccagacagtttcagtacctccacgttctc ctggacctcagctctcacgagaaagaaaaagtgcgctcggcagccctgaacatcatcaag tggatgtacgagaaggaccacctgcgagactacattgagaagtttgccctgaactacatg cagcttctcgttcacccgaatccgccctcgttgctgttcggggtcggagaggacacagag gtggcagctccctggacagaggagaccgtgagacagtgtctgtacctctacctctccctt cttcctctcaaccaccgcttggtccacgagttagctgcggtctacaccgaagctatcgct gacatcaagcggagcgtgctccgtgtcatcgagcagcctattagaggaatgggaatgaac tctcctgatctgctgctgctggttgaaaactgtcccaagggggcagagactctggtcact cgctgtctacacatactgactgataaagtccctccatctccagacctggttgagcgagta cgggatctctatcacaaacgagtgccagatgtgcgtttcctcattccagtcatcaacggc ctggaaaagaaagaggtgatccaggcattgcccaaacttatcaagctcaaccccatagta gtcaaggaggtcttcaatcgcttgctggggacacaacacagtgaaggcagttcttccgtg tcccctctgactcctggcgaactcctcatcgctctgcataacatcgactccaccaaatgc gacatgaagtccatcattaaagctacgaacctgtgctttggtgagaagaacgtgtacacg tcggaggtgctggccgtggtcatgcagcagctgatggagcagaatcctctccccatgctg ctcatgcggaccgtcatccagtcacttacaatgtaccctcgcctgggtggcttcgtcatg aacatcctcactcgcctgatccccaaacaggtttggaagtaccccaaggtgtgggaagga tttgtgaagtgctgccagcgcaccaagccacagtcctacaccgttctgcttcagttgcca ccagcgcagctttccagcgttttcgagcgctgccctgagatgagagagcctctccttcag catgtccgctcctttaccccacaccagcaagcccacattccgtcctccatcatggctatt ctggaggctaacagtcggatgcctgagcctgaaccaccacagcaggaacctgagcacata aaagtgcaggaggaaagagagttacacacccaacagtttatgaggcccataacccaggtg gaaactcgagctccaattgtagtagcagctcctcctgaactagtgcctgagtcagtagtc agaagagaggaaatagaggagcctatggaggaaggagaggcgggttcagaacgtctcgag attgccaccgaagccacaacgcaaatggaaacacctgaaattgaatctgcatccacctct gttccccaggaaacagcagaggaaccaatggagacgactattactgagcctgcagaaaac cagcagaaagaggtggtagaggaacaaggcccagaacccgaaacacaagcaaacgatcct gaataa

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