Silurus meridionalis (southern catfish): 124379493
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Entry
124379493 CDS
T08004
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124379493 (zc3h12b)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
124379493 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
UBA_N4BP1_C
TNFR_ELAPOR1_6th
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
124379493
NCBI-ProteinID:
XP_046695816
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All DBs
Position
25:16903868..16921714
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AA seq
992 aa
AA seq
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MILELAAPASAGPLLQRSIPHIERVFRVRVSCSAADTHTHTHTRARTRIHNGTGTGTHTD
TRTHTGSDTEPRSEPQPGGVVVVIIQDGTEEDCSRAKNYIVSLISPAQRHHERLTLWLQR
RFHEPESSEARDHAPKLMEDEEGEEEGSSSESEGERRSAGRGGGGRARKSELMMGTKPHR
QLCRSPCLDRPSFSQSSTLQELRTDDSPATPTSSSLAPPIQLMSHTPSDRDYQSKMEFAL
KLGYSGEQVEAVLSKLGPSALTNDVLAELVRLGNRGEIEAQTQTQTSAGLTPAGLALSPR
GSGAKESVSPEASLEEETNDTYDNLRPIVIDGSNVAMSHGNKEVFSCLGIQLAVDWFLER
GHKDITVFVPAWRKEQSRPDAPITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIV
KLACDSDGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLEN
FLRKRPVVPEHKKQPCPYGQYSKCKKCTYGHKCKYYHPERAAQPIRSVADELRAFAKLSA
VKTMSEGALAKCGISGTITKGDCSEVKRVAPKRQSDPSIRSVGCEQEERLCPARKSEANS
VPSLVTALSVPTMPPTKSHAAGALNTRSASSPVPGSLHFTHSSLEHAGSIQYPPILVTNS
QGASVAYSEPFPKYDSVVSDHGYYSMLSDFSTLSLGSMQDSFCSLEQPDPVGVGGGYPGR
ASSICPESGRSHSSDSFSSYSGEMYSMEGSMDDGMKIPPSAQSQVQSQVQSRLQAFAHGF
HHEALTRVQSYGTDEPKPGPRKQTSAHLVPHTQHQVIGARSSCPGDYPLLPQNVLPSSVP
AQPGRSLGMTRMDSISDSRLYESNPLRQRRPPLCREQHASWDPLPCGNEPYGYGGYGLTG
GLMPCCERVMVRSMPEKMEQIWRSPWDMSPGPHGLVEPQERHPIPEHQYQTYRNLCNIFP
AYVVHSVMEKNPHMTDPQQLAAVIVTKLRSCH
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgattttggagctggcagctccggcaagtgcaggcccgctgctgcagcgctccatcccg
cacatcgagcgcgtttttcgggtcagggtgagctgcagcgccgccgacacccacacacac
acccacacgcgtgcgcgcacacgcatccacaacgggaccgggaccgggacacacaccgac
accaggacccacaccgggtccgacaccgagcccaggagtgagccgcagcccggcggcgtt
gtggtcgtgatcatccaggatggtacggaggaagactgcagcagggctaaaaactacatt
gtgtctctgatctctccggctcagagacatcatgagcgtttgaccctgtggctccaacgt
cgtttccacgagcccgagagctccgaggcccgagatcatgcgcccaagctgatggaggac
gaggaaggagaggaagaagggagtagctcggagagtgaaggagagagacggagtgcagga
agaggaggaggaggaagagcaaggaaatccgaactgatgatggggactaaacctcaccgg
cagctatgccgctctccgtgtctggaccgtccgagttttagccagagcagcacgctacag
gaactgcgcactgacgattctccggccactcccacttcctcatcgctggctccacccatt
cagttgatgagccacacaccttctgatcgggactaccaaagcaaaatggagtttgcgctg
aaactcgggtactccggcgagcaggtggaggccgtgctgagcaaactgggtccgagcgcg
ctcactaacgacgtcctggccgaactcgtgcgactcgggaatcgaggagaaatcgaggca
caaacgcagacgcagacgtctgctggattaacgccggctggtttagcgctaagcccgcgt
ggctctggggcgaaggaatccgtgagtccagaagcatcactcgaggaggagacaaacgac
acgtatgacaacctccgacccatcgttatagatggatccaacgtggccatgagccatgga
aacaaagaggttttctcatgcctgggcatccagttggcggtcgactggttcctggagcga
ggacacaaagacattacggtgtttgtaccggcgtggaggaaagagcagtcccgacccgat
gctccaataactgatcaggaaatcctgagaaagttggagaaagagaaaatcctcgtcttc
actccttctcgccgggtccagggacgacgtgtggtctgttacgatgatcgttttatcgtt
aaattggcgtgtgattccgacggcatcatcgtgtcgaacgataactatagagatctgcag
aatgaaaaaccagagtggaaaaagttcatcgaggaacggctgctcatgtacagttttgtc
aatgacaagtttatgccaccggatgacccactaggccgacatggaccaagcctggaaaac
ttccttcgtaagcgtcctgtcgtcccggagcacaaaaagcaaccgtgtccttacggtcag
tacagcaaatgtaagaagtgtacgtatggccacaagtgtaagtactaccacccggagaga
gcagcgcagccgatacgatccgtcgcagacgaactccgagctttcgccaagctgtctgcg
gtcaagaccatgagcgaaggtgctctcgcaaaatgcggcatttctggcaccatcacgaaa
ggagactgttctgaggtgaagcgggtggcgccgaaacgtcagtcggaccccagcattcgt
tctgtgggttgtgagcaggaggagcgactctgtccagctcggaaatccgaagcaaactcg
gttccatctttagtgacagctctcagcgtcccaaccatgcctccgacaaaaagtcacgca
gccggggcattaaacactcgttcggctagtagcccagtaccagggtcgcttcacttcacc
cacagctcactagaacatgccggaagcatccaataccctccaatattggtcaccaacagc
cagggtgcatccgtggcatacagtgaaccctttcccaaatatgattccgtagttagcgac
catggatactattcaatgctgagcgatttctccactttaagcttaggaagcatgcaagac
agcttctgtagcttagaacagccagatccagttggagtcggaggagggtatcctggtcga
gcttccagcatttgtcctgaatctggacgcagccactcttcggactccttctcctcctac
agtggagagatgtattccatggaaggtagcatggatgatgggatgaagattccaccatct
gctcaatcccaagtgcaatcccaggtacagtctcgtttgcaagcttttgctcatgggttc
caccatgaggctttgaccagagtccaaagttacggcacggatgaacccaaaccggggcca
cgcaaacaaacctcggcccatcttgtgcctcacacgcagcatcaggtgattggagctcga
tccagttgccccggtgactatcctctgcttccccagaatgtgttgccttcgtccgttcct
gctcagccaggcagatctttgggaatgacacgaatggacagcatttcagattcccgtctt
tatgaaagtaaccctctccgacagcgtcgcccccctctgtgtcgagagcaacatgccagc
tgggatcctttgccatgtgggaatgagccttacgggtatggagggtacgggctgacggga
ggactcatgccctgctgtgaaagagtgatggtccggagtatgccagaaaaaatggaacag
atttggaggtcaccgtgggatatgtcaccaggacctcatggactggtggaaccacaggag
cgacacccgatccctgaacaccagtaccagacatatcgaaacctctgcaatatcttccca
gcatacgtagtccattcggtcatggagaagaatcctcatatgacggatcctcagcagcta
gcagcagttattgtaacgaaactacgttcctgtcattga
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