Silurus meridionalis (southern catfish): 124379538
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Entry
124379538 CDS
T08004
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04270
Vascular smooth muscle contraction
smeo04625
C-type lectin receptor signaling pathway
smeo04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
124379538 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
124379538 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
124379538 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124379538 (arhgef12b)
Membrane trafficking [BR:
smeo04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
124379538 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
124379538
NCBI-ProteinID:
XP_046695895
LinkDB
All DBs
Position
25:13985330..14028151
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AA seq
1440 aa
AA seq
DB search
MSSSQFTVADRFPKKPTRPGSIINKDHPPDKKPKSEKVSAPPTHDFDPTELPVQSVERRP
ESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVT
HSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSEGEGDGDTLSSLSSPYSPGPTVAERS
SSSSTSPSERITSPLPAWAMKEEYSRNPTARLLKDIQEAQKHIPLLPSQLSKATTAGQDG
LLFPRPGEGDSEKGGGLGDVDTSPSWHFDTESPMNSNSAPVTPSMIPESMYQRDTPCHSP
KSTLRVSLNSCPSPDGEDAVDLDSNYPCSVGSPSSRLPPPIIGAEDDDFDTEQEQMNGQC
SCFQTIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYAELYKQSNPKETRRIFGELHSTF
MDRSAQLKVTVPDLISADMDRWKPDLLPEDIQRQHVQQIQDILLPDIQKHLEDFRQKRSM
GLTLAEAELSRLDTERVRDRVALERERSCSEHIISKINEVLLTPSATEEEKCTAMQFVIQ
AYMKHLGVKVKESRGFEPKPKLINLLPKIKKTIKPEKDGSVEEKLKKSRFQIIRGHNKRP
SRTDVSSITKALEQSKQRTQKQPSQISLGTTDPPETPSAGRTRSSQSSEGPDGSTSAVSS
PPFSASPSQSSDSTTRESESGATPSSALPRLGEVGPQGEGPDSSTSVTHFDFTCPLDHLQ
QEEPEMDRNPDGGTPRPLRRMELLSSGEVQSEDDQAFEVEPEQDPPHWQTLVSTDVLALL
PQHEIKRQEVINELFYTERAHLRTLKVLDNVFYQRMSRETILPPADIKNIFANLEEIVQL
HVSITEQMTAIRKKNETTVVDLIGDDLLSWFSGTEEDKIKRAVGTFCSNQPFALELIKSK
QKKDQRFAAFVQDAESNRQCRRLQLKDMIPVEMQRLTKYPLLLENIAKYTDDIEEKSKVK
RACECCRQILNHVNQEVKEAENKQRLEDYQRRLDLSSLKQSEYPMIAEFKNLNLTKRKMV
HEGPLSWKVNKDKTIELYTLLLEDILVLLQRQDEKLILKCHSKNLAGTAETKHIFSPIIK
LSTVLVRSVATDNKAFFVVSMSDYGAQIYELMAQTVSEQKTWHDLIGQRADCMKSLPQND
PEREADDEMNTGMPKLNKDPDRISTGSVQSPEKDATSEIIQLPAAGSNPFDTKSDDEEEA
EEEVERSNSLQVQEEEEEAFLDTELAERLPFLKQGSRHAIAVEDLPPLMADEALRTLATL
RQLLINHMDGQEDVDRERAETQLPELREGSLQGPEENAAPSSSVENGAERTETAHARTEN
RHELPSGDTGFFETSEDFVGSYMVLEGYGGSGESSTDDDGQLCSTERTAAGDSGIDLKKL
LSSTSSESKGPNFSRQIMTHLRLLQANLQQLKDVESKYNQLCQRHSEQPATESEENKDKS
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctcacagtttacagtagctgacaggtttcccaaaaaaccaaccagaccagga
agtattatcaacaaggaccacccccccgacaagaaacccaagagcgagaaggtgtccgca
ccacccacacatgactttgaccccacagagctgcctgtgcagagtgtagaacgaaggccc
gagtcgtgtgggcttgtccagaggtgtgtgatcatccagaaggatgagaatggcttcggg
ttgacggtgagcggcgataatccagtatttgtgcagctggttaaagaggatggagctgct
atgcgagctggcgttcagacgggtgacagaatcatcaaggtcaacgggactctagtaaca
cattccaatcatgtcgaagttgtgaagttaatcaaatcgggttcgtacgtggctctgacg
gtgttggggagacccccgggtttgccgcagatccccttatcagagggagaaggagatgga
gacacactttcgtccctcagctccccctattcccccggccccactgtagcagagcgctca
tcctcttcctcaacctctccctccgagcgcatcacctcccctttacccgcatgggctatg
aaggaggagtacagcagaaaccctacagcgagactactgaaggacatccaggaggcccag
aagcacattcctctacttccgagccagctcagcaaagctaccacggctggccaggatggc
ctgctttttccgaggccgggggaaggagactcggagaaaggaggagggttaggagacgtg
gacacttctccatcctggcactttgacacagagtcccccatgaacagcaactcggcaccg
gtcacgccaagtatgatcccagaaagcatgtaccaaagagacacgccatgccacagccca
aagtcgacgctgcgcgtcagcctcaactcgtgcccgtctcccgatggcgaggatgcagtc
gacctggactcaaactatccgtgtagcgtggggagcccatcgtcccgtctgcctcctccc
atcatcggagctgaggacgatgacttcgacaccgaacaggagcagatgaacggtcagtgt
agctgttttcagaccatagagctgttgaagtctcgacctgctcatcttgcagccttcctg
caccacgtggtctctcagttcgaccctgcacctctgctgtgctacctctatgccgagctt
tacaagcagagcaaccccaaagagacgcggcggatattcggggagcttcactccacgttc
atggaccgatcagcgcaactgaaagttacggtgccagatttaatctcagctgacatggat
cgatggaagcctgatttacttccagaggatattcaaagacagcatgtgcaacagatacag
gacatacttctacctgacatccagaaacatctggaagacttcaggcagaagcgcagtatg
ggcctgactctggctgaagccgagctcagccgactcgacacggagcgcgtgcgagaccgc
gtggccctggagagagagcgctcctgttcggagcatatcatctccaagatcaatgaagtc
ttgttgacgccatcggctaccgaggaggagaagtgtacggccatgcagttcgtcatccag
gcctacatgaagcacctcggggtcaaggtgaaggaatctcggggcttcgagcccaagccc
aagctaataaaccttctccctaaaatcaagaagacgataaaaccggagaaggacggaagc
gttgaggagaagctgaagaaatcccgcttccagatcatccgcggccataacaaaaggccc
agcaggacagacgtctcctcaattaccaaggctctagagcagagcaagcagcggacacaa
aagcagccgtcgcagatctcactaggcacgaccgatccgcccgaaacaccttcagcaggc
cggacacggagcagtcagtccagcgaagggccggacggcagcacgagcgccgtcagctcc
cctcctttcagcgcttccccctcacagagctccgacagcacaaccagagagtcagaatca
ggtgctactccgtcatcagcattacccaggctcggagaggtcggccctcagggtgaagga
ccggactcctctacgtcagtcacgcacttcgacttcacctgtcctctggaccatctccaa
caggaggagcctgaaatggacagaaatcccgatggaggaacgccacggccgctcagaagg
atggagctgttgagctcgggagaggtgcagagcgaggacgatcaggcgtttgaggtggag
ccggagcaggaccctcctcactggcagacgttggtgagcacagacgtcctcgcgctcctg
ccgcaacatgagatcaaaaggcaggaagtgatcaatgaactgttctacacggagcgcgct
cacctgcgcacgctgaaggtcctggacaacgtcttttaccagaggatgagccgagagact
atactgccccctgcagacatcaaaaacattttcgccaacctggaagagatcgtccagcta
cacgtgtctataacagagcaaatgacggccattcggaagaagaacgagacgacagtcgtg
gacctcataggagacgatttgctgtcctggttcagcggaacggaagaagataagatcaag
cgggcagtaggaaccttctgcagtaaccagccctttgctctggagcttatcaagagcaag
cagaagaaggatcaacgatttgctgcctttgtgcaggatgccgagagcaatcggcaatgt
cgaaggctccagctgaaggacatgatcccggtggagatgcagagactcaccaaatacccg
cttctgctcgagaacatcgcgaaatacaccgacgacatcgaagagaaaagcaaagtgaaa
cgagcctgcgaatgctgccggcagatcctcaaccacgtcaaccaggaagtcaaagaagct
gaaaacaaacagaggttagaagactaccaaagaagactggacctgtcatcactgaagcag
agcgagtaccctatgattgcagagtttaagaacctcaacttgaccaaacggaaaatggtg
cacgagggaccactttcttggaaagtgaataaagacaagactattgagctctacacgctc
ctgctagaggacatcctggtgctgctccagaggcaggatgaaaagctgatcctgaagtgc
cacagtaagaatctggcaggcacggccgagacaaaacacatcttcagcccgatcatcaag
ctcagcaccgtcctggtgcgctctgtagcaacagacaacaaagcgttcttcgtagtgtcc
atgtcggattacggggcacagatctatgagctgatggcgcagaccgtgtccgagcagaag
acgtggcacgacctcatcgggcaaagggcagattgtatgaagagcctgcctcagaacgac
ccggagcgggaagctgacgacgagatgaacactggtatgccgaaactgaacaaagatcca
gatcgcatctctactggaagcgtccagtccccagaaaaagatgctacttcagagatcatc
cagctccctgcagcaggaagcaacccatttgacaccaagtcagatgatgaggaagaggca
gaggaagaggttgagcgctcaaactcgctgcaggttcaggaggaggaggaggaggccttc
ctagacacggagcttgccgaaagactcccgttcttgaagcagggctcgaggcacgccatc
gctgtagaagatctgcctccgctaatggcggacgaggcgcttcgaaccttggctactctg
agacagctcctgattaaccacatggacggtcaggaggatgtggacagggagagggcggag
actcagctgcctgaattgagggaaggatctttgcaaggcccggaggaaaacgctgccccc
agtagctcagtggagaacggcgcggagagaacggagacggcacacgccaggacggagaac
cgccacgagctgccttcaggagatacaggcttcttcgaaacctcagaggactttgtaggt
agttacatggtgctggagggttacggcggttctggcgagagcagcactgatgacgacggg
cagctctgcagcaccgagcgcacagcagcaggagactctggcatcgacctgaagaagctc
ctgtcctcgacttcctctgagagcaaagggcccaactttagcagacagatcatgacccac
ttgcgcctgcttcaggccaacctccagcagctgaaggatgtagaatcaaaatataaccaa
ctatgccaaaggcactcggagcaaccagctactgaatcagaagaaaacaaagataaaagc
tag
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integrated database retrieval system
