Silurus meridionalis (southern catfish): 124379593
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Entry
124379593 CDS
T08004
Symbol
lingo1b
Name
(RefSeq) LOW QUALITY PROTEIN: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124379593 (lingo1b)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
124379593 (lingo1b)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
Ig_2
ig
LRR_9
LRRNT
LRR_EndoS
V-set
Motif
Other DBs
NCBI-GeneID:
124379593
NCBI-ProteinID:
XP_046695945
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Position
26:complement(3991520..4013600)
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AA seq
621 aa
AA seq
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MTFLVTSRMVAGMVSGHSYLVACWQPILILMLGTVLSGSTTGCPSRCECNAQERSVLCHR
RKLVALPEGIPIETRLLDLSKNRLKAINPEEFINYPHLEDLQLNENVISVIEPGAFSNLF
GLRTLGLRNNKLKLIQLGVFTGLSNLTRLDISENKIVILLDFMFQDLYNLKELEVGDSEL
VFISHRAFHGLTSLEQLTMERCNMTLVPTEAFSHLHNLLVLKLWHFNVNLIREFSFRRLY
RLKVLEIANWPFLKALTDKSLHGLNITTLSVTHCNLTAIPYVAIQHLVYLRXLNFSFNPI
EVVEGNKLHNLMRLQVFDLVGGRLVTIEPYSFRGLNYLKVLNISSNSLSTLEESAFHSVG
NLETLALYDNPLACDCRLLWVFRRRWRLNFNKQQPSCATPEFVQGKEFKDFPDILPANYF
TCQKSKIRDHKALQRFVDEGTTVHFACQADGDPTPVIMWQSPRKQFITTKSIGRLSVSLD
GTLEVRYAQIQDNGTYTCIATNAGGNDTKLAHLHVHSYSPNWPHQPNKTFAFISNQPNDS
GANETGRSVPFPFDMKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNAKPNIEIEYVP
RRVEGQTSPTEETHKIRMKMM
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgacatttctggtaaccagcagaatggtggctggcatggtgagtgggcacagctacctg
gtggcatgctggcagcccattcttatcctaatgctgggcactgtgctgtcaggttccaca
acaggatgcccgtcacgctgtgagtgcaatgcccaggagcgctctgttctgtgccaccgc
aggaagctggtagcccttccagagggaattcctattgagacacgactgttggacctgagc
aaaaaccgcctgaaagccatcaacccggaggagttcatcaactatccccacctggaggac
ctgcagcttaatgagaacgtcatctcagtcatcgagccaggtgcattcagtaatctcttt
ggattacggacgttaggactgcgcaacaacaaactgaagctcattcagctgggcgtgttt
actggtttgagcaacctcaccagactggatataagtgagaacaaaatagttatcttgctg
gatttcatgtttcaggacctttacaatctaaaagaactggaagtgggagatagtgagctg
gtcttcatctctcatcgagcctttcatgggctcaccagtttagagcagctcaccatggag
aggtgcaacatgaccttggtgcccacagaggcctttagccatctgcataacctgttggta
ctcaagttgtggcattttaatgtcaacctcattagggagttttcctttaggagactctac
cgactgaaagtgttagagatagcaaattggccctttctcaaagccttgacagataagtcc
ctccacggactcaacattacaacactgagtgtcacacactgcaacctcactgccatccct
tatgtggccatccagcaccttgtgtacctgcgcnntctaaatttttcattcaatcccata
gaggttgtggagggcaacaaactgcacaacttgatgaggctgcaggtatttgacttagtc
gggggtcgattggtcactattgagccttactctttccgaggtctgaactaccttaaggtt
ctcaacatttccagcaatagcttgagcactttagaagagtctgccttccactcggtcggt
aatcttgagaccctggcgctatatgacaaccccttggcatgcgactgccgcttgttatgg
gttttccgccggcgctggaggctcaatttcaacaagcagcagccatcttgtgctacacct
gagtttgtgcaaggaaaagagtttaaagatttcccggatatcctccctgcaaattacttc
acctgccagaaatctaagattcgtgaccacaaagccctccagagatttgtggatgaaggg
accacagttcatttcgcatgccaggcggatggggacccgacccctgtgatcatgtggcag
tctcctcggaaacaattcatcactaccaaaagtattggacgtctgtcagtgtctctggac
ggcaccttggaagtacgatatgcccaaatacaggacaacggcacttatacatgtattgcg
accaatgcagggggtaatgacaccaagcttgctcatttacatgtccatagttattcaccc
aactggccccatcagcctaataaaacctttgcttttatctccaaccagcccaatgacagt
ggtgccaatgagactggtagatcagtcccatttccatttgatatgaagactcttatcatt
gcgacgactatgggatttatttctttccttggagtggttttgttttgtcttgttctcctt
tttctttggagtcgggggaaaggtaatgccaagccaaacatcgaaattgagtatgtgcca
cgtagagtagaagggcagaccagtcctactgaggaaacccataagatcagaatgaaaatg
atgtaa
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