Silurus meridionalis (southern catfish): 124379898
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Entry
124379898 CDS
T08004
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124379898 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124379898 (vps35)
Membrane trafficking [BR:
smeo04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
124379898 (vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
124379898
NCBI-ProteinID:
XP_046696482
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All DBs
Position
26:complement(11322286..11351551)
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AA seq
796 aa
AA seq
DB search
MPTTQQSPQDEQEKLLDEAVQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVR
SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQAEEEMTGDINDSI
DFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNVDKYKQ
VVLSGVLEQVVNCRDSLAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQHVNVKNIII
ALIDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
CYPERVDYVDKVLESTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLQLKH
FPPLFEYFDYESRKSMSCYVLSNTLDYNTTILAQEQVDAILNLVSTLIQDQPDQPAEDPD
PEDFAEEQSLVGRFIHLLHSDDPDQQYLILNTARKHFGAGGNQRIRYTLPPLVFAAYQLA
FLYKDNASSDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE
TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMRCFSEENHEPLRTQCALAASKL
LKKPDQCRAVSICAHLFWSGRNTDKNGDEIRDGKRVMECLKKALKIANQCMDPSLQVQLF
IEILNRYVCFYERENDAVTVQVLNQLIQKIREDLPNLEASEETEQINKHFHNTLEHLRLQ
RESPESEGPAYEGLVL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccactcagcagtcaccccaggatgagcaggagaagctgctggatgaagcagtt
caggctgtaaaagtgcagtccttccaaatgaaacgttgcctagacaagaataagttgatg
gatgcactgaaacatgcgtctaacatgctgggcgagctcaggacctccatgctgtctcct
aaaagctactatgaactctatatggccatatcagatgaactacactacctggaggtttac
ctgactgacgagtttgctaaaggccgtaaggtggccgacctgtatgaacttgtacagtat
gccgggaacatcatccccagactgtacttgctgataacagtgggagtggtatacgtgcgc
tcgttccctcagtcacgcaaggacattttgaaggacctggtggagatgtgtcgtggtgtt
cagcatcctctgagaggtctgttcctgaggaactacctgctccagtgcacacgcaatatc
ctacctgatgacggagaacaggctgaggaagagatgaccggcgacatcaatgactccatc
gattttgtcctgctgaactttgctgagatgaataagctgtgggtgagaatgcagcaccag
ggccacagtcgcgaccgcgagaagcgggagaaggagaggcaggagttgcgcatcctcgtc
ggcaccaacctcgtccgactcagccagctcgagggcgtcaacgtagacaaatacaaacag
gttgttctgtcaggagtcctggagcaggtggtgaactgcagagattctctggcccaggag
tacctcatggagtgcattatacaggtcttcccagacgagttccacctccagaccctgaac
ccgtttctaagagcatgtgctgaactccaccaacatgtcaatgtcaagaacatcatcata
gcgcttattgacaggttggctctgtttgctcacagagaagatggacctggaatccctgct
gaaatcaaactctttgatattttctcacagcaagtggccacagtcatccagtctcggcag
gacatgccatcggaggacgttgtgtctctgcaggtgtccctcattaacctggctatgaag
tgctaccctgaacgcgttgactacgttgacaaagttcttgagagcaccgtggaaattttc
aacaagctcaacctggaacacattgcgacgagcagcgccgtctcgaaggagctcaccaga
ctgctgaagattcccgtggacacctacaacaacatcctgacggtcctgcagctcaaacac
ttcccgccactctttgagtactttgattacgagtcccgcaagagcatgagctgctacgtg
cttagcaacacgctggactacaacaccactatcctggcccaggagcaggtggatgcgatc
ctgaatctggtgtcaacactgatccaggatcagccagatcagcctgcagaggatcctgac
ccagaggactttgcagaggagcagagtttagtgggccgctttatccacctgctgcattcc
gacgatccggatcaacagtacctgattttaaacacagccaggaagcacttcggagccggg
ggtaatcagaggatccgctacacgctgcccccgctggtgttcgctgcctatcagctggcc
ttcctctacaaagacaatgcctcctcagatgataagtgggagaagaagtgccagaagatc
ttctctttcgcccatcagaccatcagcgccctgataaaggctgagctggccgagctgcca
ctgcgtctgttcctgcagggggcgctcgccgcaggagagattggctttgagaatcacgag
accgttgcctacgagttcatgtcacaggcgttctctctttatgaggatgaaatcagtgac
tctaaggcccagcttgcagccatcacactgatcattggcacgtttgagcgcatgcgctgt
ttcagtgaggagaaccacgagcctctgagaactcagtgcgctctcgcagcctccaaactg
ctaaagaaacctgaccagtgccgcgccgtcagcatctgcgctcacctcttctggtctgga
cgcaacaccgacaagaatggagatgagatccgtgatgggaagcgtgtgatggaatgcttg
aagaaggctttgaagatcgccaatcagtgtatggacccgtctctgcaagtgcaactcttc
atcgagatcctcaaccgctatgtgtgcttctacgagcgggagaacgatgcggtgactgtt
caggtcctgaatcagctcatccagaagatccgcgaggacctgcctaacctggaggcgagc
gaggagacggaacagatcaacaaacatttccacaacacactggagcacctgcgcctgcaa
agggagtcgccagagtcagagggccccgcctatgaggggctggtgctgtag
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