Silurus meridionalis (southern catfish): 124380046
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Entry
124380046 CDS
T08004
Symbol
irx5a
Name
(RefSeq) iroquois-class homeodomain protein IRX-5a
KO
K24889
iroquois-class homeodomain protein IRX
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124380046 (irx5a)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
124380046 (irx5a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Fungus-induced
MRP-S32
PGA2
Motif
Other DBs
NCBI-GeneID:
124380046
NCBI-ProteinID:
XP_046696682
LinkDB
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Position
26:complement(8585569..8589335)
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AA seq
452 aa
AA seq
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MAYPQGYLYQPSASLALYSCPAYSTSVISGPRTEELGRSSSGSAFAPYAGSTFSSASAAY
SSHLPYGADAAAAAATFTSYVSSPYDHTSGMAGSIGYHPYAAPLGSYPYGDPAYRKNATR
DATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPR
NRSEDEEEDENIDLEKNDDDEPNKPIDKGDSTDTETDPKILHVSEAPCDRFPDDHHGKDS
DPLLSDSDLKEAEERADALADPSKATTSSPSLSQRAHELGVHERPPEVAHVAQVVNHSNA
TSVIHSPPSAPKPKLWSLAEIATSSDRCRGGSGGGGGGDAGTVVQSALPASSAASPSRTS
TQCALPSGAVLSRPLYYTSPFYAGYTNYGSFGHLHGSHGSVTSSAATHFNGISPSVLNRA
EALARESKARSQAQVDLCKDSPYELKKGMSNI
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacccacagggttacttgtatcaaccatccgcctctttggctctctactcgtgc
ccagcgtacagcacgagcgtgatctccggcccgcgcaccgaagagctcggcagatcgtct
tcaggctcagcattcgctccctacgccggatccacgttcagcagcgcctcggctgcgtac
agctcgcatctgccgtacggagcagacgccgcggccgccgcggccactttcacctcctac
gtgagttctccttatgatcacacgtcaggcatggctggctcgattgggtatcacccatac
gcagctccactgggttcatacccgtacggtgaccctgcgtaccgtaaaaacgcgacccgg
gacgccacggcgactctgaaggcctggctcaacgagcaccgcaagaacccgtatcccacc
aagggcgagaagatcatgttggctatcatcaccaagatgaccctcacccaggtgtccact
tggttcgccaacgcccggaggagactaaagaaggagaacaaaatgacctggacgccgcgc
aacagaagcgaggatgaggaggaggacgagaacatcgacctggagaaaaacgacgacgac
gagcctaacaagcctattgacaagggagactcgacagatactgagacagatcccaaaatc
ctgcacgtgagcgaagcgccgtgcgacagatttccagacgaccatcacggcaaagattcg
gaccctttgctcagcgactcggacttgaaggaggcggaagagcgcgcggacgcgctcgcg
gacccgtccaaagccaccacgtcgtcgccgtcgctctcgcagcgggcccacgagctcggc
gtgcacgagcggccgccggaagtggcgcacgtcgctcaggtggtcaatcacagcaacgcg
acgtccgtcatccactctcctccgtcggcgcccaagccgaaactgtggtctctggcggaa
atagccacgtcctcggacaggtgcagaggaggaagcggcggcggcggcggcggcgacgca
gggaccgttgttcaaagcgcgctgccggcttccagtgccgcgtccccgagccggacctcg
acgcagtgcgcgctcccgagcggcgccgtgctgtcccgacctctgtactacacgtcgccg
ttttacgcgggttacacgaactacggctctttcggccacctgcacggcagccacggctct
gtcacgagctcggcggcgacgcatttcaacggaataagtccgagcgttttgaaccgagcg
gaggctcttgcccgagaaagcaaagcaagaagccaagcgcaggtagacctgtgcaaagac
tccccttatgaactcaaaaaaggtatgtccaacatttaa
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