Silurus meridionalis (southern catfish): 124380058
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Entry
124380058 CDS
T08004
Symbol
col8a1b
Name
(RefSeq) collagen alpha-1(VIII) chain isoform X1
KO
K23455
collagen type VIII alpha
Organism
smeo
Silurus meridionalis (southern catfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
124380058
NCBI-ProteinID:
XP_046696700
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Position
26:18325223..18347063
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AA seq
757 aa
AA seq
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MQDMAMHFHYTCGFAVLVQLYLLHNAEAGAYYGHQQLAQQNQPLPQLPHMPRGKEGIPQQ
QYLGKELPHLPYGNDMPILPYYGNEQPQIPYPLANPNLGKGENILRGQKGPSAENILRGQ
KGPSGENIPRVQKGPAGEVGPMGPRGPPGPSGPPGQGIQGVPGKPGLPGPQGYPGIGKPG
MPGLPGKPGGIGMPGPKGDMGHGGEVGPVGLPGPPGLPGPSGLPGLSKPGGQGLPGQPGF
RGEPGQKGAPGLPGLPGPKGDFGLGLPGLPGVKGPPGPPGIQGQGGLPGVGKPGLNGLPG
APGGPGKPGVPGEQGLAGPPGEEGQPGPPGLPGIGKPGLDGFPGPSGLPGGKGEPGPPGF
PGGPGLPGVGKPGYPGQKGDKGYGGLPGAPGQKGEKGHGGFPGIIGPTGPGGLPGPPGHM
GPPGGIGFPGQKGEGGEVGPKGQAGLTGEPGPQGLPGKPGLPGEGGQPGPRGLPGPLGPQ
GENGHKGLPGLPGVNGKPGPKGEVGLPGDKGGQGPIGIPGFMGPSGPIGPPGLPGPKGEY
GPPGKPGPPGEGKSGIPGPMGPPGKPGPGGLPGKPGIPGFPGPPGPPGPPSGNGAVLPEV
GPGLDGAMQGAYKKHKPGEFIGRNILEMPAFTAQLTAPFPPVGTPVVFNKILYNGNQNYN
PQTGIFSCSIPGIYYFAYHVHCKGGNIWVALQKNNEPVMYTYDECKKGYLDQASGSAVLP
LQSGDSVHIQLPSDQAPGLYAGQYVHSSFSGYLLYPM
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacatggccatgcatttccactacacctgtggatttgcagtattggtacagctt
tacctgctgcataatgccgaagcaggggcatactacgggcaccagcagctggcccagcaa
aaccaaccactgccgcagttacctcacatgccgcggggcaaggaagggatcccccagcag
caatacttagggaaagagttgcctcatctgccatatggaaacgatatgcccatactccca
tactatggaaatgaacaaccgcagattccctatcctttggcaaaccccaatctaggcaaa
ggtgaaaacattctccgaggtcagaaaggtccctcagctgaaaacattctccgaggtcaa
aaaggtccctcaggtgaaaatattcccagagtccagaaaggtcctgcaggtgaggttggc
cctatgggacctcgaggacccccagggccctctggaccaccaggccaggggattcaagga
gttcctggaaaaccaggtctaccaggccctcagggataccctgggattggaaaacccggc
atgccaggactgccaggaaaacctggagggattggaatgccaggaccaaagggtgacatg
ggtcatggtggtgaggttggaccagtaggcttgccaggaccccctggtcttccaggccca
tctgggttaccgggtctgtcaaaaccaggtggacagggattacctggacagcctgggttt
cgcggtgaacctggacaaaagggcgctccagggcttcctgggcttccaggacctaaaggt
gactttggacttggtcttccaggattgccaggagtaaaaggaccacctgggcctccaggg
atacaaggacaaggaggattaccgggagttggaaagccaggtttaaacggactacctggg
gcccctggaggtcctggtaaacctggtgtccctggagagcaagggttagcagggcctcct
ggtgaagagggacagccagggcctccaggccttccaggtattggcaagcctggtttggat
ggttttccaggaccatctggtcttccaggtggaaagggagaaccaggtcctcctggattc
ccaggcggtccaggtttacctggagttggtaaacctggataccctggacaaaaaggtgac
aaaggatatggtggcttacctggggctccaggtcaaaagggtgagaaaggtcatggtgga
tttcctggaataattggcccaactggaccaggtggtcttcctggtccacctggtcacatg
gggccgccaggtggcattggctttcctggacaaaaaggagagggtggtgaggttgggcca
aaaggacaagcgggtcttacaggtgaaccaggtcctcaaggacttccaggaaaaccaggg
ctcccaggagaaggtggacaaccaggacccagaggcttacctggacctttaggccctcag
ggtgaaaatggacacaaaggcttacctggtcttcctggagttaatggcaagcctggacca
aaaggggaggttggtctaccaggggacaaaggtggacaaggcccgataggaatcccagga
tttatggggccaagtggaccaattggaccgcctggacttcccggaccaaagggcgaatat
ggaccaccagggaagcctggaccaccaggtgaaggaaagtctggtattccaggcccaatg
ggtccaccaggaaaaccaggtcctggtggacttcctggtaaacctggaatacccggcttt
cccggaccacctggtccacctgggcctccatctggcaatggcgctgttcttcctgaagtg
ggtccaggacttgatggggccatgcaaggcgcttataagaaacacaagcctggagaattc
attggcaggaatattcttgagatgcctgcctttactgctcagctaacggcacccttccca
cccgttggcacgcctgtagtctttaacaagatcttgtacaatggcaaccagaattataac
cctcaaaccggcattttctcctgcagcataccaggaatttactacttcgcataccacgtc
cactgtaaagggggcaacatttgggttgctctgcaaaagaacaatgaaccggtcatgtac
acatacgatgagtgcaaaaaaggttatctggatcaagcgtcaggaagcgcggtactgcct
ctacagtccggagactctgtccacatccagttaccttcagatcaagcgcccgggctttac
gctggtcaatatgtccattcgtccttttctggatatttattatacccgatgtaa
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