Silurus meridionalis (southern catfish): 124380071
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Entry
124380071 CDS
T08004
Symbol
acana
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smeo00535
]
124380071 (acana)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124380071 (acana)
04091 Lectins [BR:
smeo04091
]
124380071 (acana)
Proteoglycans [BR:
smeo00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
124380071 (acana)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
124380071 (acana)
Lectins [BR:
smeo04091
]
C-Type lectins
Lecticans
124380071 (acana)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
EGF_TEN
EGF_3
Motif
Other DBs
NCBI-GeneID:
124380071
NCBI-ProteinID:
XP_046696728
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All DBs
Position
26:complement(3816376..3838105)
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AA seq
1734 aa
AA seq
DB search
MTSLLLLCLCLRVISAKWIIPDYSYTEPEKTLSVSIPIADPLQPLMGDTVVLPCYFQDDT
VDDPGAPTISPLSYRIKWSIVTEEKTTDILVAMEGHVVVNNKYTDRVQMVAYPTSLNDAT
IKITQLLSNESGMYRCEVMHGIEDSSASINVQVQGIVFHYRAITSRYTLTFEKAKAACIQ
NSAVIATPEQLQAEYDTGYHQCDAGWLSDQTVRYPIHEPREACYGDKFEFPGVRTYGVRD
VNETYDVYCFAEKMSGRVFYSKSYKKFTFDEAQDQCAKLGAKLATTGQLYLAWKAGMDEC
NAGWLADRSVRYPINIARPQCGGGLLGVRTVYRFVNQTGYPPPESKYDAICYTDEEEEGS
TLFDHTIPDILTTEATSEVISVDMGTSGPPVFIPQTSPGSELIGVVETHKPPTTTADLLY
VEQEITQLPLSSPPSIIDGFIAVTAQPLEHPVSFTGIVFHYRLRQSRYAFTFADAQLACQ
DIGAVIASPQQLQAAYEAGYHHCDAGWLADQTVRYPIVHTRERCTGDLEHLPGVRSYGVQ
SADEHYDVYCYMDKPRGNVFHVSSSGGFTYDEAVASCQSQNASLASTADLYVAWKLGFDK
CRPGWLIDRSVRYPINNPRPQCGGGKHGVHTVFKFPNQTEYPDLHSKFDAYCLQVDLQLN
LYENEYNMTHIEEDLVNLTTITDLSMAVNHTFTSSIPMDISGSGSAGLPSGGSGFSGDVS
ASGSEEQPSGSSDLGRELSGSGLPSGSSGFSGELSGSGLPSGSSGFSGDLTGSGFPSGSS
GFSGEPSGSGLPSGSSGIGGEFSGSGLPSGSSGFSGELSGSGLPSGSSGIGGELSGSGLS
SGSSGFGGEFSGSGLSSGSSGFGGELSGSGLPSGSSGFGGELSGSGLPSGSSGFGRELSG
SGLPSGSSGFGGELSGSGLPSGSSGFGGELSGSGLPSGSSGFGGELSGSGLPSGSSGFGG
ELSGSGLPSGASGLGGELSGSGWPSGFSGLGGELLGSGLPSEFSGLEEISGSGLPSASSG
LEGEPSGSVLPSRFSGLGGEFSGFELPSGSSAIGCDFSGSGQSGDMSGSGLSDLGISVTF
SGKDTIISGDGSASGTPQEAGEGSTEILTFMSGLGSGFFSGDGDGSGSGSGSSFGSGESG
STTDIFSIFGESSRGETSGISSGLDSSGEFSGFSGLPSGVMSSGDDSGFSGISGSGIMMV
KGQWMDVSTASTLTAQELGGSQMYFSGSGAQQGSGSSGSGVSGSADLSGSGSGSGFPDIT
FLKSGLTDLIDLYSTEQEASGTLTYGSGEGSGDFDEVSGLSSGDTSEASASGEIISFTDE
SLVEVPSKSTQNQELRKGPVEHSGRESELSLSSGHHYTTMSTEEHHPTSIPSEDQVHLTD
EPTVQVPSGLLSNSELPQEILSNAAKSSWNYNSVTPTSTTGTTTDPAFSMQTPTVIEIPA
IEKAAVDPCHPNPCGAAACSVQDGVGVCHCPPGVPAEECHFEVDVCHSNPCANGATCVEV
QDAFKCLCLPSYGGDRCEIDTETCEEGWTKFQGNCYLHFSERTMWEEAEQHCRSLGAHLV
SITNPEEQAFVNGNAQDYQWIGLNDKTLQNDFQWTDGTPMQYENWRPNQPDNYFNSGEDC
VVMIWHEYGQWNDVPCNYHLPFTCKIGPVTCGQPPEVKNARWFGTKKERYQVNSIIRYQC
HDGFRQRHPPVVRCMADGHWQEPKVECIPQTKRRLLKRSIRRQSVKRSSLRKHL
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atgacatctttgctgttactttgcttgtgtcttcgggtaatctcagcaaaatggatcatt
ccagactactcatatacagaaccagaaaaaactctaagcgttagcattcccattgctgac
cctcttcaacccttaatgggtgatacagtggttttgccctgttacttccaggatgacaca
gtggatgacccaggtgctcccaccatatcccctttgtcttatcgcatcaaatggagcata
gtcaccgaagagaagaccacagacattttggtggccatggaaggtcatgtggtagtgaat
aataagtacacagatagagttcaaatggtggcataccccaccagtttaaatgatgccacc
attaaaatcacacagcttctttcgaatgaatcgggaatgtatcgctgtgaagtcatgcat
ggaatcgaagacagtagtgcttctattaatgtccaagtgcaaggcattgtgttccactac
cgtgccattacttcacgttacaccctgacgttcgagaaggcaaaggcggcctgtattcag
aatagtgctgtgattgccacaccagagcagctacaggcagaatatgatacaggataccac
cagtgtgatgccggctggctttctgaccagactgttaggtatcctatccacgaaccccga
gaggcctgctatggcgacaagtttgaattcccaggagtgagaacgtatggagtaagagat
gtaaacgagacctatgatgtgtattgctttgcggagaagatgtcagggagggtattctat
tcaaaatcctataaaaagttcacctttgatgaagctcaggatcagtgtgctaagctgggt
gctaaattagccacaactggtcagctgtatctggcctggaaggctggtatggatgaatgc
aatgcaggctggctggcagacaggagtgtccgttatcccatcaacattgcccgaccccag
tgtggaggaggtcttcttggagtgcgtacagtgtaccgcttcgttaatcagaccggctat
cctccaccagaatcaaaatatgacgctatctgttacacagatgaagaagaagagggctca
accttattcgaccatacaattccagatatactgactacagaggctacaagtgaggtaata
agtgtggatatggggacaagcggcccacccgtatttattccgcagacctcacctgggagt
gagctaattggcgtggttgaaacccacaaaccccccaccacaactgctgacctcctgtat
gtagaacaggaaatcacacagctgcctttgtcttcaccacccagcatcattgatggcttt
attgcggtgactgcacagccattagagcatccagtgtcctttactggtattgtcttccac
tacaggctacgccagagtcgctatgctttcacatttgccgacgctcagttagcctgccag
gatattggtgcagtgattgctagtcctcagcagttacaggctgcctatgaagcaggctat
caccattgtgatgcaggctggctggctgaccagactgttaggtatcctattgtacataca
cgagagagatgcactggtgatttggaacatttgcctggtgtgaggtcttacggtgtacaa
tctgctgatgagcactatgatgtatactgttacatggacaaaccaagagggaatgttttt
catgtgagttcctctgggggtttcacatatgatgaagcagtggcttcttgccagtcccag
aatgcctccttggcctccacagctgatctgtatgtggcctggaaactaggctttgataag
tgtcgtcctggctggctcatcgaccgcagtgtccgctatcccattaataatccaagacct
cagtgtggaggagggaagcatggagttcatactgtcttcaagtttcccaaccagactgaa
tatcctgatcttcactccaaatttgatgcctactgcttgcaagttgatctccaattaaat
ttgtatgagaatgaatataatatgacacatattgaagaggacttggtgaacctgaccaca
ataactgatctttccatggctgtgaaccacaccttcacttcatccattcccatggacatc
tctggttctggttctgcaggcctgccatctgggggcagtggtttttctggtgatgtatca
gctagtggaagtgaggagcagcctagtgggtcatcagatttaggaagagaactttcagga
tctggacttccatctgggtcctcaggttttagtggagaactttcaggatctggacttcca
tctgggtcttcaggttttagtggagaccttacaggatctggatttccatctgggtcttca
ggttttagtggagaaccttcaggatctggacttccgtctgggtcttcgggtattggagga
gaattttcaggatctggactgccatctgggtcttcaggttttagtggagaactttcagga
tctggacttccgtctgggtcttcgggtattggaggagaactttcaggatctggactgtca
tctgggtcttcaggctttggaggagaattttcaggatctggactgtcatctgggtcttca
ggttttggaggggaactttcaggatctggactgccatctgggtcttcaggttttggaggg
gaactttcgggatctggactgccatctgggtcttcaggttttggaagagaactttcggga
tctggactgccatctgggtcttcaggttttggaggggaactttcaggatctggacttcca
tctgggtcttcaggttttggaggggaactttcaggatctggacttccatctgggtcttca
ggttttggaggggaactttcgggatctggactgccatctgggtcttcaggttttggaggg
gaactttcaggatctggactgccatctggagcttcaggcttaggaggagaactttcagga
tctggatggccatctgggttttcaggtttaggaggagaacttttaggatctgggctgcca
tctgaattttcaggtttagaagaaatttcaggatctggactgccatctgcatcctctggt
ttagaaggagaaccttcaggatctgtactgccaagtaggttttcaggtttaggaggagaa
ttttcaggatttgaactgccaagtggttcatcagccataggatgtgatttttcaggatct
gggcaaagcggagacatgtctggctcaggccttagtgatttaggcataagtgtgactttc
tcaggaaaagacacaataatttctggtgatggatcagcttcagggacacctcaggaagct
ggggagggcagtacagagatcctcactttcatgtcaggtcttggttctggcttcttcagt
ggggatggggatgggtctgggtcaggaagtggttcaagttttggttcaggggagagtggg
tctacgacagatatatttagcatttttggagaaagcagtagaggggaaacctctgggatt
tcttcaggtcttgattctagtggggaattctctggattcagtggtttgccatcaggtgta
atgtcttctggagatgatagtggtttctctggaattagtggcagtggaataatgatggtg
aaaggccagtggatggacgtatccactgcttcaacccttacagctcaagagctgggtggt
agtcaaatgtatttcagtggctctggagctcaacaggggtctggttcaagtggctccggt
gtgagtggaagtgctgatttaagcggctctggaagtggttcaggatttcctgacatcacc
tttttaaagtcaggtcttactgatctcatagacctatacagtacagaacaagaagcctct
ggaactttgacatatggatcaggagaagggagcggtgatttcgatgaagtctctggtctt
tcatcaggggacacatctgaagcatcagctagtggagaaattatttcatttactgatgag
agcttggtggaagttccttcaaagtccacgcaaaaccaggagctcagaaaaggaccggtc
gagcacagcgggagagagagtgaactatctttgagtagtgggcaccactatactactatg
tcaacagaagaacaccatcccacatccatccctagtgaagatcaggttcatttaactgat
gagccaacagttcaagttccctcagggctgcttagtaacagtgaactgccacaggaaatc
ttgtcgaatgctgctaaatcctcctggaattataattctgtgactccaacatctacgacc
ggcaccactaccgaccctgccttttcaatgcagactccgactgtcatagagatcccagcc
atcgagaaagctgctgtggacccatgtcatccaaatccctgtggtgctgctgcgtgttct
gtgcaggacggggttggcgtatgccactgtccacctggggtgccggcggaagagtgccac
tttgaggttgatgtgtgccattcaaacccttgtgccaatggagctacgtgtgtggaggta
caggatgctttcaaatgcttatgcctgcccagctatggaggggatcgctgtgagatcgac
acagaaacatgtgaggagggctggactaagtttcagggtaactgttacttacacttctct
gagagaaccatgtgggaggaggctgaacaacactgccgaagtcttggagctcacctggtc
agcatcaccaacccggaggaacaagcatttgttaacggcaatgcacaggattaccaatgg
atcggcctaaatgataagactttacaaaatgacttccagtggacagatggaaccccaatg
caatatgagaactggaggcctaatcagccagataattatttcaattctggtgaggattgt
gtggtaatgatctggcatgaatacggtcagtggaatgacgtaccttgcaactaccatcta
ccattcacatgcaaaattggcccagtaacatgtggccagcctcctgaagtgaagaatgct
cggtggtttgggactaagaaggagcgctatcaggtcaactcaataattagatatcagtgc
catgatggcttcaggcagcgccatccacctgtggtccgctgcatggcagatggacactgg
caagagccaaaggtggaatgcataccccaaaccaaaagaagactactgaagagatccatt
aggcgccaatctgttaagaggtcatcattgaggaagcacctctaa
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