Silurus meridionalis (southern catfish): 124380151
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Entry
124380151 CDS
T08004
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124380151 (chd9)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124380151 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
DUF5994
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
124380151
NCBI-ProteinID:
XP_046696902
LinkDB
All DBs
Position
26:9145363..9222713
Genome browser
AA seq
2915 aa
AA seq
DB search
MDYFGDPNIFEDCFTSVHVSLADELDLGSGFGTLQLNAVEAEKHPGIEASTLPSANQHGV
DYHQRIGQFDGMKVQTSMAQSFPSQGGDGSVGGVFINEQSHFQDPTMNQAPQTNGLYPNS
SPIWGEQRANAYHHQQLQHQHQQLQQHQQLQQQRHKQHMCQQPFPEQFQHRQGQQRHQHQ
FNHQHSHLQQGQQVLRQHLLSAQHPMPHQQINPQILHRHAKSYPDHTNVYYQENVASHQG
HHSAINSERSPFHPGVDPQAKSYLEVHLIAATSQQQSGFEMAQTVQGFPGVPDTEDNNLG
YHVQSSPAAYAMSSCSANIASSYPSSQYSFPGQPSPVVTSSQHHSNIPPATRNSSCLYMA
DPIMEQQPKGSQIQVPGNHPQECPFRALPSKQVQDAYGASEVFSEGLGPFSTSNGPFSHE
IDDDHSVSGSGFQGLDEVALLDHQGGIGAIGAGHNILEEDLLPELEAFVQQDTSSWNNTR
HNEVRRENMVNDSEGVDFTDSLTLRFKAQPPKNTNGSSSQSRLLSPPMKSSSSSSSSSSS
SSSSSSSHSSSSEKRIPKRPQQMESFSLEDKQQKANRIISEAIARARERGEKNIPRVMSP
ESFPSSSELHKHRAGSSKSRTKKGCKSARIIKPSREKQKSLINKIVIKIGKKKKRKTESS
DDLSDDEPPPRRPSKDDDSKRRSNRQIKRKKYAEEQEARMSDEETKVIAKAKKINANTQK
QPAVQLFVENPSEEDGAVVDKIMASRVVKKEVSPGVVVEVEEFFVKYKNYSYLHCEWATE
QHLEKDKRIQQKIKRFKIKQAQRAHFFANMEEDPFNPDYVEVDRVLEVSYCKDKDTGEPV
VYYLVKWCSLPYEDSTWELKEDVDQSKIVEFEQLQAAKPDSRRIERPPASHWKKLEQSRD
YRNGNSLREYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLDEIQSTGIKRPFLI
IAPLSTIANWEREFRTWTHLNIIVYHGSALSRQMLQQYEMYFRDAQGRVIKGAYKFQAVI
TTFEMILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFRLMRLEHKVLLTGTPLQNTV
EELFSLLHFLEPARFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPK
EETIIEVELTNIQKKYYRAILERNFSFLAKGAGQANVPNLVNTMMELRKCCNHPYLIKGA
EEKILEDFREVCSPSASDFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDI
LEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTC
IIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQS
MSGRDNSLGGGGTSQQQLSKKEIEDLLRRGAYGALMDEEDEGAKFCEEDIDQILQRRTKT
ITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDLDTANGRNSLVIDTPR
VRKQTRPFSATKDELAELSEGESSGDDKPKLRRPHDRLNSYGRTECFRVEKNLLVYGWGR
WKDILQHGRFKKQLTERDVEWICRALLAYCLVHYRGDDKIKSFMWDLIGPTEDGRTKELQ
NHLGLSTPVPRGRKGKKMKTQSSGFDIQKAEWLRKHNPEHMLSDDGYKKHLKHHCNKVLL
RVRMLYYLKQELIGSQCQKVLDGVESSAIEIWVPEPDNSELPVMWWDMLADKCLLIGVYK
HGYEKYNTIRADPALCFLERVGRPDEKAIAAEQRANDFIDGDGDDPEYKPAPTLLKDDME
DDASSPGELVITDTGEGGSMLDGGCSSLGVVTGAYWPSSSALTARLRRLITASQRFTKSR
QILQIHQTQQIITPDICALPPMLTDAINPKMAAKIERQQRWTRREEADFYRVVSTFGVVF
DPEMGRFDWTKFRAMARLHKKTDESLHKYLCAFTAMCRRVCRLPPREGDVVDPSLSIQPI
TEERASRTLYRVELLRQIREQVLRHPQLFERLSLCQPGSDLPVWWEPGTHDRDLLIGAAK
HGVSRTDYHILRDPELSFMTAQRNYSQNKGAPAQSQAPNQALLLGQTRTPTPLAQIQTPG
APPSPLTNSTPREVTPKEELLLDGEEEAGTKSWQSLRPSTPTGEELKEEEKEAENEKRME
AARTKPLVPNPEHRKQKKLSKRSRKEARRKSGSETDSDASSSSSSSSSSTRSSSSSSSSS
RSGSGSSSSSSSCSSGSSSSSSSSSSSEDSDGEAVSKNNAVVSGVKGFDEDSIASHSTTH
DDMQDSHVTNGITSLSHPFLGGGYMLAASYWPKDRVMINRLDSICQAVLKGKWPVSRRVY
EGSAAVSSFYTTKLMDSAANLTDDPAASPQGSKVKKHDADREKEFSVKINDQEGSLKLTF
QKQGLQLKRPLDGEEGPLAQQQYLARLQELQSASDSSLTDYTKTQNSYPHGLSGQSRLNG
MVDGQPLMKKRRGRKKNVEGVDHLFMNKNRPTAIPDQVPPGWSGVSAPVSTPGASQVAGP
VDTESRVPVINLKDGTRLAGDDAPRRKDLDQWLKEHPGFVADVGAFIPGVNKVQFQDGRP
KQKRHRCRNPNKIDVNSLTGEERVQIINRRNARKIGGAFAPPLKDLCRFLQENPEYGVPP
EWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGRRPKSAMAKATSTANANASAALGVNP
LLSNGLISSLDLNSLQALQSLQSFQLTAGLMGLQTDPANMAAMLPMMLSGMAGLPNLLGM
NSLLGKQEAGSGEDSGKNSGGETTAQTSEIHSERTESPSSTSASSSGQALALNPLLLSSM
LYPGMLLNPGLNLPVTNQPQATSPQPTPPAQPTPSDAAQKSSGQLEKDAEDEGEEPDDPK
DISGPEGSGKAESSSSDAESSSSSSSEDSDSTDED
NT seq
8748 nt
NT seq
+upstream
nt +downstream
nt
atggactattttggtgaccccaacattttcgaggattgttttacctcagtccatgtttct
ttggcggatgagctggaccttggctcagggtttggcacactgcaacttaatgcagtggaa
gccgagaaacaccctggaatagaggcaagtactttgccatctgctaaccagcatggggta
gactaccatcaacgaatagggcagtttgatgggatgaaagtccagacgtccatggcacag
tcctttcctagccaaggaggagacggcagtgtcggtggcgttttcatcaacgagcagtct
cattttcaagacccaaccatgaatcaagcacctcagaccaatggactgtatcccaacagc
agtcccatatggggggaacagagagccaatgcctaccaccatcagcagctgcagcatcag
catcagcagcttcaacagcatcagcagctgcagcagcagcggcataaacaacatatgtgt
cagcagccttttccggaacaatttcagcatcgtcaaggccaacaacgtcatcaacatcag
ttcaatcatcaacattcacaccttcagcagggtcagcaagttttgagacagcatctgctg
tcagctcagcatccgatgccccaccaacaaattaacccccagattttacatcgacatgca
aagagctacccggaccataccaacgtctactaccaagaaaatgttgcatcccaccaaggc
caccacagtgcgattaattcagagcgaagcccttttcatccaggagttgatccacaggct
aagtcttacctcgaagtacatctgattgccgcaacatctcagcaacaaagtggatttgag
atggctcaaacggtacaagggttccctggtgttcctgacactgaggacaataatctaggg
taccatgtacagtcttcccctgcagcctatgccatgtcttcctgttcagctaatattgca
tcttcctatccctcttctcagtattccttccctggtcaaccttctcctgtcgtaacttca
tcacagcatcacagcaacatcccacctgctactcgtaattccagctgcttatacatggca
gatccaataatggaacaacaaccaaaggggagtcaaatccaggttcctggaaatcatcct
caggagtgtccttttcgtgctctaccttctaaacaagtccaggatgcttatggtgcttct
gaggtgttctctgaaggcctaggtcctttctctacatcaaacggtcctttctctcatgag
atagatgatgaccacagtgtcagtggaagtgggtttcagggtctggatgaagtcgcgttg
ttggatcatcagggaggcattggggcgataggagcaggacataatattctggaagaagac
ctgctgcctgagctggaagcttttgttcagcaggacacatccagctggaacaatacaaga
cataatgaagtacgtcgagagaacatggtaaatgattcggaaggtgtggattttacggat
tcactaactttgcgttttaaggcccagcctccgaaaaacactaatggttcgagcagccag
tcccggttgctcagcccgccgatgaaaagcagctcctcctcttcttcctcctcgtcctcg
tcttcctcgtcttcgtcctcgcactcgtcctcctcggagaagcgtatccccaagcggcca
cagcagatggagtcgttttcgctggaagacaaacagcagaaggccaaccgcatcatttct
gaggccatcgccagggcacgcgagcggggcgagaagaacatcccgcgcgtaatgagcccc
gagagtttccccagctcctccgagctgcacaagcacagagcgggatcttctaaatccaga
acaaagaaaggttgtaaaagtgctcgcatcattaaaccttccagagaaaagcagaagagt
ctgatcaataaaatagtcataaagatcggaaagaagaagaaacgcaagacagaatcttca
gatgatctctcggatgacgagccgccgcctcgacgaccctctaaagatgatgattcgaag
cgtcggtcaaacagacagataaagaggaagaagtatgctgaggagcaggaggccaggatg
tctgatgaggaaactaaagtcatcgccaaagccaagaagatcaatgcgaacactcagaaa
cagcctgctgtacagctgtttgtggagaatcccagcgaggaggacggagctgtggtagat
aaaatcatggcctctcgtgtagtaaagaaggaggtgtctcctggagttgtggttgaagtg
gaagagttttttgtaaaatacaaaaactactcttacctgcattgcgagtgggctacagag
caacatttggagaaggacaagaggatccagcagaaaatcaagcgcttcaagattaaacag
gcacagagagcacacttcttcgccaatatggaggaggatccatttaatcctgattatgta
gaagtggacagagtcctggaggtgtcttattgtaaggacaaggacactggagagccggtg
gtgtattacctggtgaagtggtgttctttgccgtatgaagacagcacgtgggagctaaag
gaagatgttgatcagagtaagattgtggagtttgaacagctgcaggcagcgaaaccagac
tccagaagaattgagcgccctccagcgagtcactggaagaagttggagcagtcgagggat
tatcggaatggaaacagtctcagggaataccagcttgagggcgtcaactggctgcttttc
aactggtacaacagacgtaactgtatcttggctgatgagatgggtttggggaaaaccatc
cagtccatcacttttctggacgagattcaatctactgggatcaaaaggccattcctgatc
atcgccccactctccactattgctaactgggagcgcgagttccgcacgtggacccacctc
aacatcatcgtctatcacggcagcgcgctcagccggcagatgctccagcagtacgagatg
tacttccgagatgctcagggccgtgtgattaaaggcgcatacaagtttcaggcagttatc
accacatttgagatgattttaggaggctgtccagagctcaacgccatcgattggcggtgt
gtgattatcgatgaagctcatcgtctgaaaaacaagaactgcaaactgctggagggcttc
agactcatgcgcctggagcataaagtgttgttaactggcacaccgctgcagaacactgtg
gaggagctgtttagtctgctgcatttcttagaacctgcacgattcccctcggagactacc
ttcatgcaggagtttggagacttaaagactgaagaacaggtacagaagctgcaggccata
ctaaaaccgatgatgcttcgccgcctgaaggaggatgttgaaaagaagctggctccgaaa
gaagagaccattattgaggtggagctcacgaacattcagaagaaatactaccgcgccatt
ttggagaggaacttctcttttctggccaaaggagccggtcaagccaacgtccccaatctt
gtcaacaccatgatggagctgaggaaatgctgcaaccacccctacctcatcaaaggtgca
gaggagaagattttggaggattttcgcgaggtgtgcagcccctcggcttctgacttccac
ctgcaggccatggtgcagtccgcgggcaaactcgtcctcatcgacaagctgcttcctaaa
atgaaggccggcggccacaaagtgctcatcttttctcagatggtgcgctgcctcgacatc
ctcgaagactacctcatccagagacgatacctctatgagcggatagacgggcgtgtgcgt
ggaaaccttcgccaggctgcgatagaccgtttcagtaagcccgactcggaccgcttcgtc
ttccttttgtgcacaagagcaggaggactgggcattaacctcactgctgcagatacctgc
atcatctttgactctgactggaaccctcaaaatgacctgcaggcccaggctcgatgccac
agaattggccagaacaaggcggtgaaggtgtaccgacttattacacgcaattcgtatgag
cgcgagatgtttgacagggccagtctcaaactgggattggacaaagcggtgctgcagagt
atgagtggtcgggacaacagtctcggaggaggagggacaagccagcagcagctttctaag
aaagagattgaggacctcttgaggcgtggtgcatacggtgcgcttatggatgaggaagac
gagggtgccaaattctgtgaggaagatatcgaccagatcctgcagcgcagaaccaaaact
atcaccattgagtcagagggacgggggtccacctttgccaaggccagttttgttgcctct
gggaatcgcacagacatttcattggatgatccaaacttctgggataaatgggcaaagaag
gctgagattgatctggacactgccaatggcagaaatagcttggtgattgacacaccgagg
gtaaggaaacagacccggccgttcagtgccactaaagatgaactagccgaactgtcagaa
ggtgaaagcagcggtgacgataagcccaaactgcggcggccgcacgaccgcctcaatagt
tatggccgcacagagtgcttcagggtagaaaagaacctcttagtctatgggtggggccgc
tggaaggacatcctgcagcatggccgctttaaaaagcagctaaccgagagagacgtagag
tggatctgtagagcgctactcgcctactgcttagtgcactacagaggcgatgacaagatc
aagagttttatgtgggacttgattggtccgactgaggacggcagaaccaaagaacttcag
aaccacttaggactctccacgccggttcctcgtggccggaaggggaagaagatgaagact
cagtctagcgggtttgacattcagaaagctgagtggctcaggaagcacaaccctgaacac
atgctgtctgatgacggatacaagaagcatcttaagcatcactgtaacaaggtgttgttg
agagtgagaatgctatactacctgaaacaggagcttattggttctcagtgtcagaaagtg
ctggatggagttgaatcaagtgcgatagaaatctgggttcctgagccggataattccgag
ttgcctgttatgtggtgggacatgcttgcagacaagtgtctgctgataggagtttacaaa
catggttatgagaagtacaacactatacgtgcagatcctgctctgtgcttcctagagcgg
gttggcaggccggatgagaaggccatcgctgctgaacagagagcaaatgactttattgat
ggggatggcgacgatccagaatacaagcctgcgcccactttgcttaaagatgatatggag
gatgatgcttcttctcctggtgagctggtcataacagacacaggagaaggtggctctatg
ctggatggtgggtgcagttcactgggagttgtcactggagcatactggccatcttcatct
gccttaacagctcggctgcggcgcttgatcaccgcatcacagcgcttcaccaagagtaga
cagatcctgcagatccaccagacgcagcagattatcacccctgacatttgcgctttgcct
cccatgcttacggatgcgatcaatcccaaaatggctgccaagatcgagcgacaacaaagg
tggaccaggagagaagaggcggatttctaccgcgtggtgtcaacgttcggtgtcgtgttt
gatccggaaatgggccgcttcgactggaccaaattcagagccatggctcgcctgcacaag
aagacagacgagagtctccacaaatacctctgtgcttttactgccatgtgcaggcgggtc
tgccgcctaccaccgagggagggcgacgttgtggatccgtcactctccatccagccaatc
accgaagagcgtgcttcacgtacactgtacagagtggaactgctccggcagattcgggaa
caggttctgcgccaccctcagctcttcgagcgactgtcactgtgccagcctggctcagat
ctgcctgtgtggtgggagccaggcactcatgaccgagacttactaatcggtgcggccaag
cacggagtgagccggacagactaccacatcctcagagatcctgagcttagcttcatgaca
gctcagaggaactacagccaaaacaagggtgcacccgcacaaagccaagcccctaatcag
gctctgctgcttggacagacacgcaccccaaccccattagcgcagatccagactcctgga
gctcccccttcaccgcttactaactccacccctcgggaggttacacccaaggaggagctg
cttttagatggagaggaggaggcggggacaaagagctggcaatcgctaaggccttccaca
cctacaggagaggagctaaaagaagaagagaaagaagcagagaatgagaaaaggatggag
gctgcccgaacgaagccacttgtgcccaaccctgaacaccggaagcagaaaaaactaagt
aaaagaagtcgcaaggaggcaaggaggaagtccgggtcagagacggattcagacgcgtct
tcctcaagctcctcatccagctcttcaacaagatcttcatcttcatcgtcgtcttcttca
aggtcagggtctggttcctcgtcctcgtcgtcttcctgctcttccggctcgtcatcttcg
tcgtcttcatcctcgtcttctgaggacagtgatggtgaagctgtttcaaagaacaatgca
gtggtgtctggtgttaaaggctttgacgaggacagcattgcatctcatagcactacacac
gacgacatgcaagacagtcacgtgaccaacggcatcactagcctctctcatcccttcctt
ggtggaggctacatgctcgctgcttcctactggccgaaggaccgtgtaatgataaaccga
ctggatagtatttgtcaggcggtattgaagggcaagtggcctgtgtctcggcgtgtgtac
gagggtagtgctgcagtatcctcattttataccaccaagctcatggacagcgcagccaac
ttgactgatgaccctgcagcctctcctcagggttcaaaggtgaagaagcatgatgcagac
agagaaaaggagttctcagtcaaaataaatgaccaggaaggcagtctaaaactgacattc
cagaagcagggtttgcagttaaagcgtcctcttgatggtgaggagggacctctggcccag
cagcagtacctggctagactacaggaactgcagagtgcatctgatagcagcctgactgac
tacaccaaaacacagaacagttatccccatggtctgagtggacagagccgactgaatgga
atggttgatggtcagccattgatgaagaagaggagaggaagaaaaaagaatgtagaagga
gtagatcatctctttatgaacaagaacagacctactgcgatacccgatcaggttcctcct
ggttggagcggggtctcagcccctgtctcgacgcctggagcatcgcaggttgctgggcct
gtggacacagagagcagagtccccgtcataaatctaaaagacggaacacgtctcgctggg
gatgacgctcccaggcggaaagatctagatcagtggctgaaggagcacccaggcttcgtg
gcagacgttggagctttcatcccgggggtaaataaggtacagtttcaggacggaagaccg
aagcagaagaggcatcgctgtagaaatcccaacaagattgacgttaatagcctcacagga
gaagaaagagtccaaatcatcaataggagaaatgctcgcaagattggtggtgcgtttgct
cctcctttaaaggatttgtgccgattccttcaggaaaatccagaatatggagttcccccg
gagtgggcggatgtcgtcaaacagtcgggctacctcccagagagcatgtttgaccgcatc
ctaacaggtcctatcgtaccggaagaggtgagcagacgtggcagacggcccaaaagtgct
atggcgaaagccactagtacagctaacgcgaatgccagtgcagctctcggtgttaacccc
ctcctgagcaatgggcttatctccagtctggacctgaacagcctgcaggccctgcagagc
cttcagagctttcagctgaccgcaggactcatgggcctccagacagatcctgccaacatg
gccgccatgcttcccatgatgctctctggcatggctggcttgcccaacttactcggcatg
aacagcctgcttggaaaacaggaagctggctccggtgaggattcaggaaagaacagcggt
ggggaaacaacagctcagacttcagagattcactcagagaggacagaaagtcccagctca
actagtgcttcatcctcaggccaagcgttagccctcaaccccttactgctctccagcatg
ctttacccagggatgcttctcaacccaggccttaatttacctgtgaccaatcagccacaa
gctaccagtcctcaacccacccctcctgctcagcccaccccctctgacgctgcacaaaaa
agctcaggccaattggagaaggacgcagaggatgaaggagaggaaccagacgatccgaag
gacatcagtggtccagagggctcgggaaaggcagagtcatcttcctcagatgcagaaagc
tcttcatcttcgtcatcagaggactctgattccactgacgaagactga
DBGET
integrated database retrieval system
