Silurus meridionalis (southern catfish): 124380250
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Entry
124380250 CDS
T08004
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124380250 (upf3a)
03015 mRNA surveillance pathway
124380250 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124380250 (upf3a)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124380250 (upf3a)
mRNA cycle factors
P-body specific factors
124380250 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
124380250
NCBI-ProteinID:
XP_046697058
LinkDB
All DBs
Position
3:15442227..15446787
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AA seq
501 aa
AA seq
DB search
MLKSREQLRIPKAKRRNGEMRAEKEPTTGNRERGVVEIQLRDAPREQENATANSKHKEEK
KEIFTKVVIRRLPPSLSKDQLEEHLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPED
IVLFRDRFDGYVFIDNKGQEYPAIVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYKRFLEN
YSCDEEKSMANPETLLGEIEAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRE
LEKKRQREEEKRKRREEERRKRKEAEKQKKLSEKEIKIKLLKKCDRDDEVESDRLKEKGD
SGETTERNKWEKSTGHTKAKELKDNRVQESDKEQREGHGRRQRDKDQRGREEERKRQRHH
YEFDKFMRRKEETKWGKGYCHDRAKKDGHHHGYSYCSEIGDKSSKEDRDEMGSRKERIRN
KSVLVHQEKRTSQSEGPDQIGGALPAKDRPAMQLYQPGARNRKRMGSGNKGFDFNRLSPE
PSTEPCYELTIGTGSEKSGDE
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtctcgcgagcagctgcgaattccgaaagcgaagaggagaaatggagagatg
agggctgaaaaggaaccgacaacgggaaacagagagagaggcgtcgttgagatacagttg
agagacgctccgagagagcaggagaacgccacggcaaattcgaagcacaaagaggagaaa
aaggaaatctttaccaaggtcgtgattcgacgtcttccacccagcctgtcaaaagaccag
cttgaggagcatctcagtccactgccttcttatgactactttgagttctttcctgctgat
caaagcctgtatccacatcttttctccagagcatacatcaactttaaaaacccagaagat
attgttcttttcagagatcgttttgatggttatgtttttattgataataaaggtcaagaa
tatccagcaattgtagaatttgcaccttttcagaaagtttccaagaagaagcttaagaag
aaagatgccaaagcaggaagcattgaagaagatccagaatacaaacgatttctggaaaat
tactcttgtgatgaagagaagtcaatggccaatccagaaacactattgggtgaaattgaa
gctaaaacaagagagctcatagctaaacggacaacaccacttctggaatacattaagaac
aagaagttggagaagcagagaattcgggaggaaaaaagagaggagaggagacgcagagaa
ctggagaagaaaaggcaaagggaagaagagaaaaggaaacgaagggaagaggaacggcgt
aaacgtaaagaggcagagaagcaaaagaaactttcagaaaaggaaatcaaaatcaagctt
ttgaagaaatgtgacagggatgatgaggtggaatcagatagactgaaagaaaaaggagac
agtggagagacaacagagaggaataagtgggagaaatcaacaggccacactaaggcaaaa
gaacttaaagacaatagagttcaggagagtgataaggagcaacgtgaaggacatggacgc
cgacagagagataaagaccagagaggcagagaagaggagcgcaagcggcagcggcatcac
tacgagtttgacaagttcatgcgacgcaaggaggagacaaaatggggcaaaggctactgt
catgaccgggcaaagaaagatggccatcaccatggctactcctactgctctgaaataggg
gacaagtcaagcaaggaggacagggatgagatggggagcaggaaggagcgtattcgtaat
aagtctgtattagtgcatcaggagaaaaggacctcccagtctgaggggccagaccagata
ggaggggctctgccagccaaggaccgacctgccatgcagctgtaccagccaggagcacgt
aaccgtaagcggatggggtctgggaacaaaggctttgacttcaaccggctctctccggag
ccaagcactgaaccctgctatgagctgaccattggaacaggctctgaaaaaagtggggat
gagtga
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