Silurus meridionalis (southern catfish): 124380339
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Entry
124380339 CDS
T08004
Symbol
rxrab
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
KO
K08524
retinoid X receptor alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03320
PPAR signaling pathway
smeo04148
Efferocytosis
smeo04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124380339 (rxrab)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
124380339 (rxrab)
03320 PPAR signaling pathway
124380339 (rxrab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124380339 (rxrab)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124380339 (rxrab)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
124380339 (rxrab)
Nuclear receptors [BR:
smeo03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
124380339 (rxrab)
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Ortholog
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
124380339
NCBI-ProteinID:
XP_046697172
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Position
27:complement(5585898..5632735)
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AA seq
504 aa
AA seq
DB search
METKPFLSLGFLKSPCSVAPPCLQGRLGDAGSSPSGCSCFTGTCPLHQRRIPTDSSGQLS
SSPLSSLTGHRAVGPHPLHPSLLTPSSMGSAPGQLHSPINGLASAFPVINSSMGHPSITG
PSSTSMAFGPSLSPQLSSPMTSVSSPEDIKPPLGLNGVMKVPAQPTGTSLSLTKHICAIC
GDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCLIDKRQRNRCQYCRYQKCLAM
GMKREAVQEERQRAKEKSEAELELAGCSSEDMPVEKVLEAELAVEPKTETYEESSVGVAP
SSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSI
SVKDGILLATGLHVHRDSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIVLFNP
DSKGLSNPTEVEALRERVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcttgtcgctagggttcctgaaaagcccatgctcagtagcgccg
ccctgtttgcagggccggctgggcgacgctggcagctcgccctcgggctgctcctgcttc
acgggcacatgcccgctgcaccagcgcaggatacctacagattcatcaggccagctgtcc
tcatcacctctgagttccctgactggtcaccgtgctgtcggtcctcacccgctccacccg
tcccttctcaccccgtcttccatgggctccgcacctggtcagcttcactctcccatcaat
ggcttagcatcggccttcccagtcatcaactcctcaatggggcatccttccattacgggg
ccttccagcaccagcatggcctttggaccaagtctcagtccacaactcagctcccccatg
acttcagtcagcagcccggaagacatcaaacctcctttgggcctgaacggagtcatgaag
gttccagctcagccgaccggcacttcactgtctctcaccaaacacatctgtgccatctgc
ggcgatcgatcttcaggtaaacactatggcgtgtacagctgcgaaggctgcaaaggcttc
ttcaagcgtacagtgaggaaagacctgacttacacctgccgagacagcaaggactgtctg
atcgacaagcggcagcgcaaccgctgccagtactgccgctaccagaagtgtctggcaatg
ggaatgaaaagagaagctgtccaggaggagcggcagcgggcgaaagaaaagagtgaggct
gaattggagctggcaggctgttccagtgaagacatgccagtggagaaggttctggaagct
gagctggcagtggagcccaaaaccgaaacctatgaggagagcagtgttggtgtggctccc
agctctcccaacgaccctgttacaaacatttgccaagccgctgataagcagctcttcaca
ttagtggaatgggcgaagaggataccacacttttctgacctgcctttagatgaccaggtc
attcttttaagagcagggtggaacgagctcctcattgcttctttctcgcatcgctcgata
agtgtgaaagatggcatattgttagcaacaggcctccacgtccatagagacagtgcacat
agtgctggagtaggtgccatttttgatagagtgctgacagagctggtgtctaagatgcga
gacatgcagatggacaagtctgagcttggatgcctgcgagctattgttcttttcaatcca
gactctaaaggcctgtctaacccaacagaggtggaggcacttcgagagcgagtttacgct
tcactggaggcctattgtaaacagaaataccccgatcagcctgggagatttgccaaactg
ctacttcgcctgcctgccctgcgctccattggcctgaagtgtctggagcacctctttttc
ttcaaactcatcggagacacacccattgacacttttctcatggaaatgctggaggcgcca
caccaaatgacataa
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