Silurus meridionalis (southern catfish): 124380409
Help
Entry
124380409 CDS
T08004
Symbol
col8a1a
Name
(RefSeq) collagen, type VIII, alpha 1a
KO
K23455
collagen type VIII alpha
Organism
smeo
Silurus meridionalis (southern catfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
124380409
NCBI-ProteinID:
XP_046697315
LinkDB
All DBs
Position
3:complement(9269603..9281952)
Genome browser
AA seq
715 aa
AA seq
DB search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NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggttcctttcctggtgattatagtacaagtggtattattaccatctgtatgt
ggaggagcatattacaaaccccatcatcaacagcatcagcctgtacctcatatacctcac
aaaggtataggaaaggaaatgcctcatatgcagtatccaccttacagaaaagaaatgcca
cagatacccatgcatatgaacaaaggcaaggccaaaaaaggtgagaccattcctagaggt
gagcagggtattccaggtgaagttggaccacaaggtcctcaaggaccacaaggaccacca
gggcctcctgggcctaagggaaatggtatcccaggccctccaggaattcaaggccctcct
ggccctccagggttacctggccttggtaaaccaggaatgccaggcatgcaagggaagcca
ggtgaaatgggaccaaaaggagaaaaaggtgaacagggacctggtggggcagaggggcta
ccaggcaggataggaccaccaggtccacctggaccccagggcttactaggtattgggaag
ccaggtggccaaggaccaccaggactgacaggacccaaaggagaaccagggcacaaaggt
cttcctggtcttccagggttgcctggccctaaaggagataaaggaattggatatccaggc
ccacaaggcccaaaaggcccacctgggcctacaggacttcctggacataaaggattgcca
ggggtgggcaagcctggagcacctggtttgccaggacaaccaggtaaacaaggacagcct
ggaccacctggaccacttggcccattaggtccacctggcttagagggcaaacaaggacca
caaggattgcctggcattgggaaaccaggtgaggaaggagtgccgggacagccaggtgcc
ccaggccataaaggactaccagggccaccaggtttgccaggaaagcctggattacctggc
attggaaaaccaggattccctggctcaaagggtgacaaaggaatagggggaccacctggg
cctccaggactaaaaggtgaaaaaggaaatggaggtcaacctggtttggtaggacccaca
ggacccattggtcctcctggccctccaggatcagtaggaaagcctggtgggattggtgca
ccaggacctaagggagatttaggtgaaggcggagcaaagggagaacaagggcctatagga
gatccagggcctacaggaatgccaggccaaccaggtaaacctggtgaggaaggggaacct
gggccacggggaccagctggacctattggtcccaaaggagaggaaggagagaagggtcta
cctgggccccctggccttcctggcctgcctggtcttaaaggagaagggggtgcacttggt
cctgcagggcctcagggacctaaagggattccgggacttgcaggaccaggtggaccgatt
ggaccacctggccctgcggggcctaagggagaagctgggcttcctggcaaggctggttct
ccaggtgagggactccgtggtgctataggccccattggccctcctgggcctcctggccca
ggcggtgctccaggcacggcaggtcacccaggccctcctggtcctccaggaccgcctgga
ccaccagccgtaaaccctgacctcatgggtgttttgcctgagatggggccatccctggat
ggagtaaaggctggtgggtatatgaaaggaaagaacaaaggtaaagctgacataatgggt
tctactggtctggagatgcctgctttcactgctcaactcactacaccctatcctccagtt
ggcacaccagtgatatttgacaagctattgtataatggccggcaaaattacaacccaaaa
actggtgtgttcacctgcgaccttcccggtatctactacttctcatatcatgtgcattgc
aagggatcaaacgtatgggtcgggctgtaccgaaatggagaagctgtgacgtatacatac
gatgaatacaagaagggagttttggaccaggcttctggcagtgctgtggttcccttacag
ccgggagatactgttcacatccagttaccatctgaccaggcatctggactctatgcaggg
caatatgtccactcttctttctctggtttcctactgtaccccatgtaa
DBGET
integrated database retrieval system