Silurus meridionalis (southern catfish): 124380412
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Entry
124380412 CDS
T08004
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04010
MAPK signaling pathway
smeo04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124380412 (cacna1ba)
04020 Calcium signaling pathway
124380412 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124380412 (cacna1ba)
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
124380412 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
124380412
NCBI-ProteinID:
XP_046697316
LinkDB
All DBs
Position
27:complement(13850979..14000339)
Genome browser
AA seq
2307 aa
AA seq
DB search
MARFEDDLPVRYAGGSPSGAGRGPSRQQGPPGAPRIYKQTMAQRARTMAIYNPIPVKQNC
LTVNRSLFIFSEDNVIRKYAKRVTEWPPFEYMILATIIANCIVLALEQHLPADDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKDSYLRNGWNVMDFVVVLTGILTTVGTDFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMGK
FHRACFRDDTNEQVAEFPCGLEPPARLCMNGTTCREYWPGPNFGITNFDNILFAILTVFQ
CITMEGWVEILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKSPLDGAWYKRKCNNPVLKR
SKKSKNDLINAEEGEDHFTDISSVAPQGSPFARASVKSSKNESSSYLRRKEKRVRFFIRR
MVKSQGFYWTVLCLVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLIEMSLKMYGLG
PRSYFHSSFNCFDFGVIVGSIFEVIWAAVKPGASFGISVLRALRLLRIFKVTKYWNSLRN
LVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVF
QILTGEDWNAVMYHGIESQGGVGSGMFSSVYFIVLTLFGNYTLLNVFLAIAVDNLANAQE
LTKDEEEQEEAISKKLALQKAKEVKEVSPMSAASISLAALNGGALSHGSSNSSSDSPNYV
CSPAHHYLSQEQRRSLKMMSVWEQRTTQIRKHMRASSEALYHEELNPRLTSTQHLRPDVT
THLDRPLVVEPRCDWDKPKDLRVEAGTPEDPNLQVHADPLAMEPPQSQPPRKHHHRKRER
AANEAQENGETGASCHHVHHSRSKETEGTQTKDGKSERSHSRDARGEHRHHRSHRAGREG
NGGVSAKNERRPHHREGSRSGRGDGERSSRGEEGGNGGRRRHRQRAGKVQSTLEVGEQRE
NEEQEEGNPLEHRQAEMGGDMLPVTSHQLALGNQWCFEKPEDSDNQRNVSRTGGLGVRIP
VTITSPPGETTLIAMNSIDSETVPMTEKNLEEVNQSGPRPILPYSSMFIFSPTNPVRRLC
HYIVSLRYFEMCILMVIAMSSIALAAEDPVNANALRNYVLKYLDYVFTGVFTFEMVIKMV
DLGLLLHPGSYFRDLWNILDFIVVSGALVAFAFTSFMGSHQSPNRGTKGKDISTIKSLRV
LRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCT
DESKGLESDCRGQFLEYDKQEVSAQPREWRKYDFHYDNVLWAFLTLFTVSTGEGWPTVLK
HSVDATFEDQGPSPGYRIEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSECSL
EKNERACIDFAINAKPLTRYMPQNQQSFQYRMWKFVVSPPFEYSIMIMIALNTVVLMMKY
YDAPNSYEAMLKYLNIVFTALFSLECVLKIIAFGPLNYLKDAWNVFDFVTVLGSITDILV
TEINTTDRLLNLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFI
YAIIGMQVFGNIDLNEDTAINHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRACDV
NSGTPGNECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFI
RVWAEYDPAACGRIKYRDMYEMLLHMCPPLGLGKKCPPRIAYKRLVKMNMPIADDNTVHF
TSTLMALIRTALEIKLASGIVAQRLCDAELKKELATVWPNLSQKTMDLLVTPHKPNELTV
GKVYAALMIFDYYKQNRAKKVQMLQQQSKDQPGPQNNVGALLEPILNPMQQKSRSMMDCP
SNIQPSIRPSSATLNNGHTPHDNTIKGSSSWASEKTKEVQRSKKRPILRGQSEDISNANN
ARVSVEMRKMENSANTVALAGLEGQGRAVSMPKLNAEMQRSHSRHSPGTLLAPIPDSPMR
RSASTFAPQHPPEVMANDYTLERAAQERAHHHHHHHRCHHRRDREKKQRSLDRSPGGQNT
NSGGTAADPAGNSTLQERGHDRGRSHERKQHSSTAEKQRYYSCDRYGSREHFPAKPAPAS
CATSPGEAQETTFTKQGSGWAKGSLVLLSSGLSTPSRGRRQLPQTPLTPRPAVAFRTANS
SPVSAAGAQTTLPPPSPVMRISSEPFLRPQTTLLSPQQIVSLPPLSQHSLLGMPNGYHYI
MSVTTGPGGSSNNVQHYYPEAEEEEWC
NT seq
6924 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtttcgaagacgacctgccggtgcgctatgcaggcggctctccgtccggcgcg
ggccgcgggccgagccgccagcaggggcccccgggagcccccaggatctacaaacagacc
atggcccagcgagcccgcaccatggccatctacaacccaattcccgtcaaacagaactgc
ctcactgtcaaccgctctctcttcatcttcagcgaggataacgtgattcggaagtacgcc
aagagagtcacggagtggcctccgtttgagtacatgatccttgccaccatcatagccaac
tgcatcgtcctggccttggagcagcatttacctgcagatgataaaaccccgatgtctgag
cgactggatgacacagagccctacttcattggcatattttgctttgaggctgggattaag
atcattgcacttggctttgcttttcataaagactcctacctccgtaacggctggaatgta
atggatttcgtcgttgtgctgacggggattctgactacagttgggacagatttcgatttg
cggacactcagggcagtgcgggttttacggccgcttaagctggtttctggaattcccagt
cttcaggtggttttaaagtctattatgaaagccatggtgcctctgctgcagatcggcctg
ctgctcttctttgccattctcatgttcgccatcattggcctggatttctacatgggcaag
tttcaccgtgcctgcttcagagatgacaccaatgagcaggtggccgagttcccctgtggc
ctggaacctccagcacgcctctgtatgaatggcaccacctgtcgggagtactggcctggc
cccaactttggaatcactaactttgacaacatcctttttgctatactcaccgtcttccag
tgcattactatggagggctgggtggaaatcctttacaatgccaacgatgcctcagggaac
acctggaactggctgtacttcatccccctcatcatcatcggctcctttttcatgctcaac
ctggttctgggagtgctgtcaggggagtttgctaaggagcgggagcgtgtggaaaagagg
caggagttcctgaagctgcgcagacagcagcagatagagcgggagctcactggctacctg
gagtggatctgcaaagcagaggaagtcatgcttgctgaggaggacaagaatgctgaggag
aagtctccactggatggtgcctggtacaaaaggaaatgcaacaacccagttttaaaaagg
tccaagaagagcaaaaatgacctcattaatgcagaagaaggggaggatcattttacggat
atctcatcagtcgcaccccagggctccccgtttgctcgggccagcgtgaagagcagcaag
aatgagagctcctcgtatttgcgcaggaaagaaaagcgagtgcgcttcttcatccggcgc
atggtgaagtctcaaggcttttactggactgtgctgtgtttggtgggcctgaacacactg
tgtgtggctatagtgcactacgaccagcctgagtggctcacttatgctctctatctggca
gagtttgtattcttgggcctgttcttgattgagatgagtctgaagatgtacggccttggc
ccccggagctacttccactcttccttcaactgtttcgactttggcgtgattgtagggagt
attttcgaggtgatatgggcggctgttaaaccgggggcgtcttttggcatcagcgtgtta
cgagctctgcggctgctgaggatcttcaaggttacaaagtattggaactctttgaggaat
ctggtggtgtctctgctcaactcaatgaagtctattatcagcctgttgttcctcctgttt
ctcttcattgtggtgtttgctctgctcggaatgcagctttttgggggacagtttaatttt
gaagacgagaccccgacaacgaactttgacactttcccagcagcaatcctgacagtcttc
cagattttgacaggagaggactggaatgcagtgatgtatcatgggatcgaatctcaagga
ggagtgggcagtggcatgttctcctctgtttacttcatcgtcctcacactttttggaaac
tacacacttcttaacgtcttcctggctatcgctgtcgacaaccttgccaacgcacaggaa
ctcactaaggatgaagaagaacaggaggaggccatcagtaaaaagttggccctccagaaa
gctaaagaggtgaaggaagtcagccctatgtcagctgctagcatctctctcgcagcgctc
aatggaggggcgctgtcgcacggctcctccaactccagctctgattccccgaattatgtc
tgctcccctgcccatcactacttgagtcaagagcagcgacgctcactgaagatgatgtca
gtttgggagcaacggaccacacagatccgtaagcacatgcgagccagcagtgaggccttg
taccacgaggaactaaaccctcgcctgacctccacccagcacttacggcccgatgtcacc
acccacctggatcggccactggtggtggagccacgatgtgactgggacaaacccaaagac
ttgagagttgaagcaggcacccctgaggaccccaacctacaggtacatgctgaccctctt
gctatggagcctcctcagtcccagcccccgcgtaaacaccaccatcgaaaacgtgagcga
gcagccaatgaagcccaagaaaatggtgaaactggagcctcgtgccaccatgtgcaccac
agccgcagcaaggagactgagggcacgcagaccaaagatggcaagagtgagcgcagccac
agccgtgatgctagaggggaacacagacaccaccgttcacatagggcaggacgtgagggc
aatggtggtgtcagtgccaagaacgagaggcgcccccatcacagagaaggctcacgttca
ggcaggggggatggagagaggagctcacgaggtgaggaagggggcaacgggggcaggagg
agacacagacaaagagctggcaaggtgcagtctacattagaggttggggagcagagagag
aatgaagagcaagaagagggcaaccctctagaacacagacaagctgaaatgggtggagat
atgctgcctgtgacttctcatcagcttgcgctgggaaatcagtggtgttttgagaaacca
gaagactcggataaccagcgaaatgtcagccgcacaggagggctgggggtccgcatccct
gtcaccatcacgtctccacctggagaaacgactctcatagccatgaacagtatagacagt
gagacagtgcccatgactgagaagaacctggaggaggtgaaccagagcggtccacgtcct
atccttccatatagctccatgtttatcttcagcccgactaacccggtgaggcggttgtgc
cactacattgtcagccttcgatactttgaaatgtgcatcctgatggttatagccatgagc
agcattgcactggctgcagaagacccggttaatgccaacgctctgcgtaactacgtgctg
aagtatttggactacgtcttcaccggagtgttcacatttgagatggtaattaagatggta
gatttgggcttgctgctgcatccaggctcctactttagagacttgtggaatatcctggat
ttcattgttgtcagcggagccctggtggcattcgcattcacgagcttcatgggatcgcat
caaagtccaaacagagggaccaaaggcaaagacatcagcaccatcaagtctctcagggtg
ttacgagttctgcggcctttgaagactatcaaacgcttaccaaaacttaaggctgtgttt
gactgtgtggtgaactccctgaagaacgtgctgaatatcctcattgtctacatcctcttc
atgttcatcttcgctgtcattgccgtgcagcttttcaagggcaagttcttctactgcacg
gacgaatccaaaggcctggagagtgactgcagggggcagtttctggagtatgacaagcag
gaggtctcggcccaacccagagaatggagaaaatacgactttcactatgataatgtgctg
tgggcttttcttacactctttactgtgtctacaggagagggttggcctacggttctgaag
cactctgtggatgccacatttgaggaccagggccccagtcctgggtaccgcatcgagatg
tccatcttctatgtggtgtattttgttgtcttccccttctttttcgtcaacatcttcgtg
gccttgataattatcacattccaggagcagggcgataaagctttgtctgagtgcagtctg
gagaaaaatgagcgagcctgtatcgactttgccatcaatgccaaaccactgacacgctac
atgcctcagaaccagcaatctttccagtaccgaatgtggaagtttgtcgtttctccacct
ttcgagtattccatcatgatcatgatcgccctcaacactgtggtccttatgatgaagtac
tacgatgctccaaactcctatgaagcaatgctgaagtatctcaacattgtctttactgca
cttttttcactggagtgtgttctgaagatcattgcttttggccctttgaactacctgaag
gacgcgtggaatgtgtttgactttgtgactgtgctggggagtattacagatatcctggtc
actgagattaatactacggaccgtctgttaaacctgagcttcctgaggctgtttcgagcg
gcccgtctcattaaactcctccggcagggttacaccatccgcattctgctttggacgttt
gtacagtccttcaaggctctgccttatgtctgccttctaatcgctatgctgttcttcatt
tatgccattattggaatgcaggtcttcgggaacattgacctgaacgaggacacggccatt
aaccaccacaacaacttccgtactttcctgcaagctctcatgctgctcttcaggagtgct
acaggagaggcctggcacgagatcatgttgtcgtgtctaagtcaccgtgcatgtgatgtg
aactctggaacacccggaaatgagtgcggcagcgactttgcttacttttactttgtctcc
ttcatcttcctctgctctttcctgatgctgaatctgtttgttgctgtgatcatggataat
tttgagtacctgacccgggactcctccatcctgggtccccaccacctggacgagttcatc
cgtgtgtgggctgagtacgacccggctgcatgtggccgtatcaagtaccgcgatatgtat
gagatgctgctccacatgtgcccacctttaggtttgggaaagaaatgtccaccacgaatc
gcctacaagcgactggtgaagatgaacatgcccatcgccgatgacaacacggtccacttc
acctccacgctcatggctctaatccgcactgcgctggagatcaaactggcctcaggaatc
gtggctcagcgtctgtgtgatgcagagctgaagaaggagctggcgaccgtctggccaaac
ctgtctcagaagaccatggatcttctggtgactccccacaaacctaatgagctgacagtt
ggcaaagtgtatgctgcactcatgatctttgactactacaaacagaacagagctaagaaa
gtgcaaatgctgcaacagcagtccaaagatcagccaggaccacagaacaatgtgggtgct
ctcctggagcccattctaaaccctatgcagcagaagagcaggagcatgatggactgtcca
tcaaatatccagccttccatcagacccagctctgccacattgaacaacggacacacaccc
catgacaacaccattaaaggctcctcatcttgggcttcagagaaaaccaaagaggtccag
aggtcaaagaaacgaccaatcctgagaggccagtctgaagacatctcaaatgcaaacaat
gcccgggtgtcagtagaaatgaggaaaatggaaaacagtgccaacacagtagctcttgct
ggtttagagggtcaaggaagagcagtatccatgcccaaactcaacgcagagatgcagaga
agtcattcacgtcactctccaggaacattacttgctccgattcctgactcccctatgaga
cgctcggcatctacgtttgccccacagcatcctccggaggtcatggccaacgattacacg
ctggaaagggctgcacaagagcgagcacatcaccatcaccatcatcaccgctgccatcat
cggagagacagagagaagaagcagaggtcactggatcggtcaccgggtggacagaacaca
aactcgggcggcacggcagctgaccctgcagggaactccacgctccaggagagagggcac
gaccgaggccgttcccacgaaaggaaacaacattcatcgacggcggagaagcagcgctac
tactcgtgcgatcgctacggcagccgagagcactttcccgccaaacctgcaccagccagc
tgtgccacctcgcccggagaggctcaggagaccaccttcaccaagcagggcagtggttgg
gctaaagggagcctggtgttgttgagttcgggcttgagcacgcccagccgcgggcgcagg
cagctgccccagacgcccttgacccctcgcccagcggtggccttcaggactgccaactcc
tctcctgtgtccgctgcaggtgcccagaccaccctccctcccccgagtcctgtaatgcgc
atcagctccgagcctttcctccggccccagacgacgctgctaagcccacagcagatcgtg
tccctcccaccgctgtcccagcattccctgctcggaatgcccaacgggtaccactacatc
atgagcgtaactacggggcctggtggcagcagcaacaacgtccagcactactaccctgaa
gcagaggaggaggaatggtgctag
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integrated database retrieval system
