Silurus meridionalis (southern catfish): 124380506
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Entry
124380506 CDS
T08004
Symbol
rfc5
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03030
DNA replication
smeo03410
Base excision repair
smeo03420
Nucleotide excision repair
smeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124380506 (rfc5)
03410 Base excision repair
124380506 (rfc5)
03420 Nucleotide excision repair
124380506 (rfc5)
03430 Mismatch repair
124380506 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeo03032
]
124380506 (rfc5)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124380506 (rfc5)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124380506 (rfc5)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124380506 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
124380506 (rfc5)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
124380506 (rfc5)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124380506 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
124380506 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_22
AAA_14
AAA_11
RCF1-5-like_lid
AAA_16
DEAD
RuvB_N
AAA_24
AAA_assoc_2
ResIII
PhoH
AAA_7
DUF815
ATPase_2
AAA_5
AAA_30
AAA_19
TIP49
Thioredoxin_6
AAA_25
DUF4119
Motif
Other DBs
NCBI-GeneID:
124380506
NCBI-ProteinID:
XP_046697515
LinkDB
All DBs
Position
27:4513941..4522098
Genome browser
AA seq
334 aa
AA seq
DB search
MASTTKAPLQSRNLPWVEKYRPQTLDDLISHQDILSTIQKFIXEDRLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGLKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQSQMIPRI
EHVIQHESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSD
IANILDWALNKDFTTAYNQIFQLKTLKGLALHDILTELHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDTVVSDG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcatccacaactaaggcgcctcttcagagcaggaatctgccatgggttgaaaagtac
agaccacagactttggatgatttgatctcacatcaggacattttgagtacaattcagaag
ttcatcnaggaagaccgtctgcctcacctgctgttttacgggcctccaggaacaggcaaa
acctccaccattttagcctgtgctaggcagctgtacaaggataaagagttcaactctatg
gttttggagctcaatgcttcagatgaccgcggtatagatgtggttcgaggccccatcctt
agcttcgccagcaccaggaccattttcaagaaaggtttgaagttggtgattctggacgag
gcggatgccatgacccaggacgctcagaacgctttaaggagagtgattgagaagtttaca
gagaacactcggttctgtctgatctgtaactacttgtccaaaatcatccctgcgctgcag
tcacgatgcacacgcttccgttttggtcctctgtcccagagccagatgatccccagaatc
gagcatgtcatccagcacgagagcatcgacatcactccagatggcatgaaggctattgtg
acgctgtcaacaggagacatgaggcgatcgttaaacatcctacagagcactcatatggcc
tacgggaaggtgactgaagagacggtttacacatgcacaggacatcctctgcgctcagac
atcgccaacatactggactgggccttgaacaaagacttcaccaccgcgtataaccaaatc
tttcagctgaaaactctgaaaggtttagcgctgcacgacattctgaccgagctgcatctt
ctcatacacagagtggattttcctcctgctatccggatgggcttgctgattaaactggca
gacatcgagtatcgcctggcctctggtaccagtgagaagattcagctgagttcaatggtg
gctgcttttcaggcagttagagatacagtggtcagtgatggctag
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