Silurus meridionalis (southern catfish): 124380693
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Entry
124380693 CDS
T08004
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
smeo03037
]
124380693 (ift88)
Cilium and associated proteins [BR:
smeo03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
124380693 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_14
TPR_19
TPR_7
TPR_6
TPR_16
TPR_9
ANAPC3
TPR_11
TPR_10
TPR_17
ARM_TT21_5th
TPR_CcmH_CycH
TPR-S
TPR_15
Coatomer_E
DUF6584
ARM_TT21_2nd
ARM_TT21_C
DUF2225
HAT_PRP39_C
RPN7
RNPP_C
DUF2526
DUF2989
DUF5588
MIT
NIL
FumaraseC_C
Motif
Other DBs
NCBI-GeneID:
124380693
NCBI-ProteinID:
XP_046697854
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All DBs
Position
3:complement(12299714..12313557)
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AA seq
848 aa
AA seq
DB search
MENVHLVTEDEDDLYSGYNDYNPTFDPEDLDNDVGFQQAVRTSHGRRPPMTAKFPGTAVG
GRPIEMSFGLRTSMGSSTGRPMTGAVQDGAARPMTAVRAAGYSSSLTRGSTFDPLGQSRG
PAPPLEAKNEDTPEEKIKILEKKVNDLIEESCMAHANGDLQLALEKAKEAGRKERVLLRQ
REQTGTAEHINLDLTYSALFNLANQYANNDMNTEALNTYQVIVKNKMFNNAGRLKVNMAN
IYFKQKNYPMAIKFYRMALDQISNVHTEMRIKIMQNVGVAFIRMGQYSDAITSFEHIMSE
SPNIKTGFNLILCYYAIGDRKMMKKSFQKLICVPLGIDEEDKYILSNDDPHASLLIEAIK
NDQLRQMERERKALAEKYIMTSAKLIAPAIESTFAAGFDWCVDMVKGSLYVELANDLEIN
KAITYLRQRNFNQAVETLKAFEKKDSRVKSAAATNLSFLYFLEKDFDQADRYAELAMNAD
HYNPAALINKGNTVFVKQDYEKAAEFYKEALRNDSSCTEALYNLGLTYKKLGRPEEALDC
FLKLHAILRNSAQVMYQLANLYEILEDPHQAIEWLMQLISVTPTDPHVLAKLGELYDNEG
DKSQAFQYYYESYRYFPSNIQVIEWLGAYYIDTQFCEKAIQYFERATLIQPNHVVWQLMV
ASCYRRSGNYQRALEIYKDIHRKFPENAECLRFLVRLCTDMGLKEVQDYATKLKKVEKMK
EIREQRVKSGRENSARARREGSASSVNQKEGSPKPMHIPPNKVNDLDINPDSGQSSHGTS
AKGERLGVKLRTLPGPHEPYEASTPGDIDASYVDPLGPQKERPKTAAKKRTEEDEFADEE
LGDDLLPE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgttcaccttgtgaccgaggatgaagatgatctgtattcaggttacaatgac
tataatcccacattcgacccagaggatttggacaatgatgttggctttcagcaagctgtg
aggacgagtcatggcagaagaccacctatgactgcaaaatttcctggcactgctgttgga
ggaagaccgatagaaatgtcttttggtctacggacaagtatgggttcttcaacaggaagg
cctatgactggggcagtgcaggatggggctgcacgtcccatgactgcagtgcgagcagca
ggatactcatcctctttgactagaggatccacatttgatccacttggacaatcaagaggg
ccagctcctccattagaagcaaaaaatgaagacacgccagaggagaagattaagatattg
gaaaagaaggtgaatgacttgattgaggagagctgtatggcccacgcaaatggtgatcta
cagctggctctagaaaaggccaaagaagctggtagaaaagaaagagtgttgctgagacaa
agagagcaaactggcactgcagagcatataaatctggacttaacttactcagcactgttt
aatttggcaaaccagtatgctaacaatgatatgaacacagaagccctgaacacataccag
gtcattgtgaagaacaagatgtttaacaatgcaggacgactgaaagtgaacatggctaat
atttactttaaacagaagaactaccccatggcaataaaattttatcgtatggctttggac
caaatctctaatgtgcacacagaaatgaggatcaagatcatgcagaacgttggtgtcgca
ttcatacgcatgggccagtactcggatgccataacctcctttgagcacattatgagtgaa
agtcccaacataaagacagggtttaacttaattctatgctattatgccattggagaccgt
aaaatgatgaaaaaatcattccaaaagctaatctgtgtgcccttgggcattgatgaggaa
gacaagtacattctttcaaatgatgacccccatgcaagcttactgattgaagctattaaa
aatgatcagcttcgccaaatggagagagaaagaaaagctttggctgagaagtacatcatg
acttcagcaaagcttattgctccagccattgagtccacttttgcagctggttttgactgg
tgtgtagatatggtcaagggttcgctgtatgtggagctggccaatgacctagagattaac
aaggctatcacctacctgagacagaggaactttaaccaggcagtggaaacgctgaaagcc
tttgagaagaaagacagccgggtgaagagtgctgctgctaccaacctttcctttctctac
ttcctggagaaggattttgatcaagctgatcgctatgctgaattggccatgaatgctgac
cactacaatcctgctgccctcataaataaaggcaacacggtgttcgtgaagcaggactat
gagaaagcagctgagttttataaagaagcactgcggaacgactcatcctgcacagaggct
ctttataatttagggttaacctataaaaaactggggcggcctgaagaagccctcgactgc
ttcctgaaactccacgccatccttaggaacagcgctcaagttatgtatcagctggccaac
ttatatgagattttggaggatcctcaccaggctattgagtggctcatgcagctaatcagt
gtcacccccactgaccctcacgtcctggccaaactgggagagctatatgacaatgaaggc
gataagtcacaagccttccagtactattatgagtcttacagatactttccgtcaaacatt
caagtcatcgaatggttgggagcgtattatattgacacacagttttgtgaaaaggcaatt
cagtattttgaaagagcaacactcatccagccaaatcatgttgtatggcagttgatggtg
gctagctgttacaggagaagtggaaattatcagagagcacttgagatctataaggacatt
caccgcaaattccctgaaaatgcagaatgtctccgattccttgtgaggttgtgcacagat
atgggattaaaggaagtacaagattatgctaccaaactcaaaaaagtggaaaagatgaag
gagatcagagaacagagggtgaagtcagggagagagaacagtgctcgggcccgtagagaa
ggaagtgccagcagtgtgaatcaaaaagagggtagtccaaagcccatgcacattccccct
aacaaagtcaatgatttggatatcaatccagacagtggacagagcagccacggtacaagt
gccaaaggggagcggctaggtgtcaagttgaggacacttccagggccccatgaaccttat
gaagcaagcacaccaggggacatagatgcttcttacgtcgaccctttggggccacaaaag
gaaagaccaaagactgcagcaaagaaacgcacagaggaagacgagtttgcagacgaagag
ctgggggatgatttactgccagaatga
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