Silurus meridionalis (southern catfish): 124380869
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Entry
124380869 CDS
T08004
Symbol
pole
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03030
DNA replication
smeo03410
Base excision repair
smeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124380869 (pole)
03410 Base excision repair
124380869 (pole)
03420 Nucleotide excision repair
124380869 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeo03032
]
124380869 (pole)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124380869 (pole)
Enzymes [BR:
smeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
124380869 (pole)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
124380869 (pole)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
124380869 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
GBP_C
Pox_Ag35
Motif
Other DBs
NCBI-GeneID:
124380869
NCBI-ProteinID:
XP_046698110
LinkDB
All DBs
Position
27:4628694..4661395
Genome browser
AA seq
2285 aa
AA seq
DB search
MVLQNSGRFKADRAGGGDQDKQQDDWSSLSAVKRLERSQFTDEMDARYGFERMKEPGEKT
GWLINMHPTEILDDDKRMISAVDYYFIQEDGSRFKVALPYKPYFYIATKKNCEREVISFL
SKKFQGKISKLETVSKEDLDLHNHLVGLKRTYIKLSFNTVDDLVKVKREISPAVKKNRER
ETSNDTYTSMLSSALVGGSVTSAEEDGTSKKMTDQLDNIVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRGSVYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEAALIQRWFEHIHETKPNIF
VTYNGDFFDWPFVEVRAAHHNLNMYQEIGFQKDGQGEYKSSQSIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHGNIVFPNKQEQVFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPSAFDVLLQRVERTLRHAVEEEEKIPLDQVTNFNEV
CDEIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GATCQRRMSWRWRGEIMPANRSEFHRIQQQLESEKFPPLFPNGXPRAFHELNREEQARHE
KKRLGDYCRRAYKKVHLTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SVAQENSDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSTNEKKPKVTISYPGAMLNI
MVKEGFTNDQYQELVDPASLTYETRPENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEIKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEASVKKHFLRKWLKMPSLHDMDIRSILDWGYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVANQM
ESGKTPDMEDFGVPQRPIQPAILISTKRKRASQGEDSQTESQELELTQSWREILGPPPPM
GTTQEERLVWLRYHKKKWELQIRQRKERRKKRRMLDGEAQPTGGGVIRDGPTTGLGNFLR
RTARSILDMPWQIVQIAETSQPGLFKLWAVIGTDLHCMKLNIPRVFYVNQKVPKQEEGAT
YKKVNRILPRANVVYYLYQYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQ
LGCMCMVNKQVVRALAGREADTFELEHLEMRSLAQFGYLEPGSVRHIYLYHHSQGHKALF
GLFIPSQRKASVFVLDTVRSNQMPNLSTLYGAERTALLEKTSEELLPPEKHLFEVRAEND
VKAVYRAVQRILLSYKVRASGPTLIAVQSNWELRRLAAGMSVLEEFPVVPVHVTDDISYN
VLDWQRHGARRMIKHYLNLDSCLSQAFDMARYYHLPVGNLPEDISIFGSDLFLARHLRKH
NHLLWLSPTARPDLGGKEADDSRLVMESDERGSVEINTPGCFSTVCVELDIQSLAVNTIL
QSQHVNDMEGGASAGVSFDVIQHASLEDMISGNQGANAVASYDETALCSNTFRILKSMVV
SWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLLNMMKKIFLQLVAEFKRLG
SSVVYGNFNRIILSTKKRRIDDAISYVEYITKSIHSREIFHSLSITFSRCWEFLLWMDPA
NHGGVKGKVPSSILYGEQTGTDKKKKGKKEREDEASEEEEEEELEEERSEDEDEVEDLIE
SNWNIMQYLPQAASCQKYFLMIISAYIAAVYHSMREELRRNAPGATPIKRRGGSQVSQPA
AGDISALPGMITFSQEYVSSELTQNIFTITQKIQKKVCGTRSVAQPSEMFPVLPGSHLPL
NNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVEVGEFSEDAQFRDPCNSYVLPEVI
CHQCNFCRDLDLCKDPSVAPDGSVLPQWFCSNCQAQYDTDYIETALLEALQKKLMSYTLQ
DLECAKCRGVKEANMPLYCSCAGDFSLTFSTKSFTEQVDVFRSIAAHYNMNFLLENIDWI
LRMNS
NT seq
6858 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcaaaacagtgggagatttaaagcagatcgagccggaggaggggatcaggac
aagcagcaggatgactggtctagtttgtccgccgtcaagcggctcgagcgcagccagttc
acggatgaaatggacgcccgctacggcttcgagcgcatgaaggagcctggagaaaaaacc
ggctggttgattaacatgcatccgacagagattctggatgatgataagcggatgataagt
gcagtggattattattttattcaggaggacggcagcaggtttaaggttgcactgccgtac
aagccatacttctacatagcgactaaaaagaactgtgagagagaagtcatttccttttta
tcaaagaagttccaaggaaagatctcaaagcttgagacggtctccaaggaggatctcgac
ctgcataaccacctggtgggactgaagaggacctacattaaactgtcctttaacaccgtg
gacgatctggtcaaagtgaagcgggagatctcacctgctgtgaagaagaacagagagagg
gagacctccaacgacacctacacaagcatgctgtccagtgcccttgttggtggaagcgtg
acgtcggctgaagaagacggcacgtctaagaaaatgacagaccagctggacaacattgtg
gacatgagggagtacgatgtgccctaccacgttagactgtccatcgacctcaagatccat
gtggctcactggtataatgtgcggtacagaggaagtgtttatccccccgagattgtgcgt
cgtgatgacctcgtggaaagaccagatcctgttgtcttggcgttcgatatcgaaaccacc
aaactccctctaaagttcccagatgcagaaactgaccagatcatgatgatctcctacatg
atcgatgggcagggtttcctcattaccaacagagagatcgtctccgaggacatcgaggat
tttgagttcacccctaagccggagtacgagggcccgttcactgtgtttaacgaacccgat
gaggctgctctaatccagagatggttcgagcacatccatgagaccaagcccaacattttt
gtcacttataacggggacttctttgactggccgtttgtagaggtgcgtgcggctcaccac
aacctcaacatgtatcaagagatcggtttccagaaggacggccagggagagtacaagtcc
agtcagtctattcacatggactgcctcaggtgggtaaagagagacagctacttgcctgtc
ggaagccacaatctgaaagcagcagcgaaagccaagctgggttatgaccctgtggagttg
gacccggaggagatgtgccgcatggccaccgaggagccgcagactttggccacctactcg
gtgtccgacgctgtggccacctattatctctacatgaaatacgttcatcccttcatcttc
gccctgtgcaccatcattcccatggagcctgacgaggtgttgcgtaaaggttcagggacc
ctgtgcgaggcgttgttgatggtgcaagctttccacggcaacatcgtgttccccaacaag
caggagcaggtgttcaataagctcacagacgacggccatgtcctggattcggagacctat
gtgggcggccacgtcgaggctcttgagtctggagtgttccgtagcgacatcccgtgccgc
ttcaaaatgaatccgtcagcatttgacgttttgcttcagagagtggagcggaccctccgt
catgccgtcgaagaggaggagaagatcccactggaccaagtcactaactttaatgaggtt
tgtgatgagatcaagaagaagctcatttctttgaaagaagtgccgaacaggattgagtgt
cctctcatttatcatctggacgtaggggccatgtaccccaacatcatccttaccaacaga
ttgcagccgtctgccatggtggacgaggcgacctgtgctgcgtgtgattttaataaacct
ggagctacctgccagaggaggatgtcctggcgatggagaggagaaatcatgccagctaat
cgtagtgagttccaccgcattcagcagcagctggagtctgaaaaattcccacctctgttc
cctaacgganagcctcgtgccttccatgagctgaaccgagaggaacaggctcgacatgaa
aagaagcgtctgggagactactgtcggagggcctacaagaaggtgcacttgacgaggctg
gaagaaagagtcaccacaatatgccagagagagaattccttttacgtcgacacggtgcga
gcgttccgagatcgacgctacgagtttaaaggactgcataaggtatggaagaagaagttg
tctgtggctcaggagaacagcgacgcagccgaagtgaagcgatgtaaaaacatggagatc
ctatacgagtctctgcagctcgctcataaatgcatccttaattccttctacggttacgtc
atgagaaaaggagcgagatggtattccatggaaatggccggcattgtttgtcacacggga
gccaacataatcacacaggccagagagctgatcgaacagattgggaggcccttggaattg
gatactgatggtatctggtgtgtcctgccaaactccttccctgagaactttgtcatcaag
tccaccaatgagaagaagcccaaagtgactataagttaccctggggccatgttgaacatc
atggtcaaggaaggctttaccaatgatcagtaccaggagttggtggacccggcctcgctc
acgtacgagacgaggccggagaacagcatcttcttcgaggtggacggaccgtacctggcc
atgatccttcctgcatctaaagaggagggaaagaagctaaaaaagagatacgctgtattt
aacgaggacggctctctggctgagctgaaggggttcgagataaagaggagaggagagctc
cagctcattaagatcttccagtcgtccgtgttcgaggctttcctcaaaggcaccactctg
gaggaagtctacgcctcggtcgccaaagtggccgattactggctcgatgtgctctacagc
aaggcagccaacatgccggacgctgagctcttcgagctgatttcagaaaaccgctccatg
tccagaaaactggaggattacggcgagcagaaatctacgtccatcagcacggccaaacgc
ctggccgagtttctcggagatcagatggtcaaggacgccgggctaagctgtcgctacgtc
atctctcgcaaacctgagggctctcctgttaccgagagggcgattcctctggccatattc
caggctgaagctagcgtgaagaaacatttcctgcgcaaatggctgaaaatgcccagcctc
catgacatggacatcagatcaatcctggactggggttactacatcgagagactgggaagt
gccattcagaagatcatcaccattccagcagcactacagcaggtgaagaacccggtgccg
cgagttcgccacccagactggctgcataagaagcttttggaaaaaaatgacatctacaaa
cagaagaaaatcagtgagctgttcacaagtgaaggaaagagacaggtagccaatcagatg
gagtctggaaagacccctgatatggaggactttggggttccacagcgccctatacaacct
gccatcctcattagtactaagaggaagcgagcatctcagggtgaggacagccagaccgag
tctcaggagctggagctgacacagtcctggagagagatactgggtcctcctccgcctatg
ggtacaacacaggaggaaaggttggtgtggctgcgctaccataagaagaagtgggagctg
cagatccggcagaggaaagagcgtcggaagaagcggcgcatgctagatggagaagctcag
ccaactggaggcggagtcatcagggacggaccaaccacggggctgggaaactttcttcgc
aggacagcgcggagcatcctggacatgccctggcaaatagtccagattgccgaaaccagt
cagccaggcctgtttaagctatgggcggtgatcggcactgacctgcactgcatgaagctt
aatatcccgcgagtgttttatgtcaatcagaaagtacccaagcaggaagagggagccaca
tataaaaaggtgaaccgtattttgccacgcgccaacgtggtgtattatctgtaccagtat
tccgtgcctgaggacatgtatcaggaacacatcaatgagatcaatgcagacctttctgcc
ccagacatagagggcgtctacgagacccaggtacccctgcttttccgggctctggtgcag
cttggctgcatgtgtatggttaataagcaggtggtgagagcgctggctggccgagaagcc
gacaccttcgagctggagcacctggagatgaggtcactcgctcagttcggctacctggag
ccaggcagtgtgagacacatctacctgtaccatcacagtcagggccacaaggctctgttc
ggtctcttcatcccttctcagcgaaaagccagcgtcttcgtcctcgacactgtccggagt
aaccagatgccaaacttgagtactctgtatggagcggagcgcactgcactgttagaaaag
acctcagaggagctgctgcctccagagaagcacctatttgaagtgcgtgctgagaacgac
gtgaaggccgtttaccgtgcggtgcagcgtattctgctaagctataaggtacgagcgtcg
ggtcctactctgatcgctgtgcagtctaactgggagctgcggcgtctggcggcaggcatg
agcgtgctggaggagttccccgtggttcccgtgcatgtgactgacgacatcagctacaac
gtgttggactggcagcgacacggcgcacgccgaatgatcaaacactacctaaacctggac
agctgtctttcacaagcctttgatatggccaggtattatcacttgcctgtagggaaccta
cctgaggacatctccatatttggttcggacctctttctggcacgtcacttgcgaaagcac
aaccacctgctctggctttcacccacagccagacccgatctcgggggcaaagaagcagac
gatagccgtctggtgatggagagcgatgagcgcggctctgtggagatcaacactccggga
tgcttctctacggtgtgtgtggagttggacattcagagcttggctgtaaacaccatcctt
cagtcgcagcacgtgaacgacatggagggcggggctagcgcaggcgtcagctttgatgtc
atccagcacgcatcactggaggacatgatttcaggaaaccagggggcgaacgctgtggct
agttacgatgaaactgcactctgttctaacactttcaggatcctgaagagtatggtggtt
agctgggtgcgggagatcacacaataccataatgtgtacgcagataaccaggtgatgcac
ttctaccgctggctgcgttcccccagctcgctcctgtacgacccggcgctgcaccgcaca
ctgctcaacatgatgaagaagatttttctccagctggttgctgagtttaagcggctgggt
tcctccgtggtctacggtaacttcaaccgcatcatcctcagtaccaagaaacggcgcatc
gacgacgccatctcctatgtggagtacatcaccaaaagcatccattctcgagagatcttc
cactcactgtccatcaccttttcccgatgctgggagttcctcctgtggatggatccggct
aaccacggaggcgtgaaaggcaaagtgccctccagcatcttgtacggagagcagactggc
acagacaagaaaaagaaaggcaagaaggaaagagaggatgaggccagtgaggaggaggag
gaggaggaattggaggaagagcgaagtgaagatgaggatgaggtggaggacctgattgag
agcaactggaacatcatgcagtatctacctcaggctgcttcctgtcagaaatacttcctt
atgatcatctcagcatatattgccgctgtgtatcacagcatgagggaggagctcaggcga
aatgctcctggagccacgcctataaaaaggaggggcggaagccaagtgtcccaaccagct
gctggtgacatcagcgcacttcctggcatgatcacattctctcaggagtacgtgtctagc
gagctgactcagaacatcttcaccatcacacagaagatccagaaaaaggtgtgtggaaca
cgcagcgtggctcagccatctgagatgttccccgtgctgcccggatcacatctgcccctc
aacaaccccgcgctggagttcatcaaatatgtctgtcaggttctctcactggacgcaaac
atcgtgaaccaggtaaataaactgaagcgggatctcctgcgcttggtggaggtcggagag
ttctccgaggatgctcaattccgtgacccctgcaactcgtacgtcctgccggaggtcatc
tgtcaccagtgcaatttttgccgcgacctcgacctgtgcaaggacccttcggttgcaccg
gacggctcggtcctgccacagtggttctgctcgaactgccaggcgcagtacgacacagac
tacatcgagacggctctgttggaggctttgcagaaaaaactgatgagttacactctgcag
gacctggagtgcgctaaatgccgaggggtgaaagaagccaacatgcctttgtactgcagc
tgcgctggagacttcagtctgaccttcagcaccaagagcttcacagagcaggttgatgtg
ttcagaagcatcgctgcccattacaacatgaacttcctgctggagaacatcgactggatc
ctgaggatgaacagttag
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integrated database retrieval system
