Silurus meridionalis (southern catfish): 124380871
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Entry
124380871 CDS
T08004
Symbol
tia1l
Name
(RefSeq) cytotoxic granule-associated RNA binding protein 1, like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124380871 (tia1l)
03041 Spliceosome [BR:
smeo03041
]
124380871 (tia1l)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124380871 (tia1l)
Spliceosome [BR:
smeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
124380871 (tia1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
RRM_Nup35
RRM_3
XOO_2897-deam
Toxin-deaminase
Motif
Other DBs
NCBI-GeneID:
124380871
NCBI-ProteinID:
XP_046698115
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All DBs
Position
27:1285752..1294629
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AA seq
344 aa
AA seq
DB search
MMSDDDQPKTLYVGNLSRDVTEALIMQVFTQIGPCKSCKMIIDTAGNDPYCFVEFFEHMH
AAAALAAMNGRKILGKDMKVNWASMPSSQKKDTSNHFHVFVGDLSPEISTEDVRAAFAPF
GKISDARVVKDLATGKSKGYGFISFINKWDAENAIQQMNGQWLGGRQIRTNWATRKPPAP
KSNLESQSAGNTKHLSYEEVLNQSSPSNCTVYCGGVTSGLSDQLMRQTFSPFGQIMEIRV
FPDKGYSFVRFDSHESAAHAIVSVNGTCIEGHTVKCYWGKETADMRAMQQMAMPQSNPAY
AAQPYGQWGQSYGNGQQMGQYVPNGWQMPTYGVYGQAWNQQGYK
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcggacgatgatcagcccaagacgttgtacgtcggaaacctctccagggacgtg
acagaggctctcatcatgcaggtgttcactcagatcggaccctgcaagagctgcaaaatg
atcatcgacacggcaggaaacgacccgtactgcttcgtggagttcttcgagcacatgcac
gctgctgccgccctggctgccatgaacggacgcaaaatattaggaaaggacatgaaggtg
aactgggcctccatgccgagcagccagaagaaagacacaagcaatcacttccacgttttc
gttggtgacctgagccctgaaatctccacagaggacgtcagagccgccttcgctccgttc
gggaaaatatccgatgctcgtgtggtgaaagacctggctactgggaagtccaaaggctat
ggcttcatctcctttattaataaatgggatgcggagaacgctatccagcagatgaacggc
cagtggctcggagggaggcagatcagaaccaactgggccaccaggaagcctcctgcaccc
aaatccaacctcgagagtcagtccgcaggcaacaccaaacacctgtcctatgaggaggtg
ctgaaccagtccagccccagtaactgcaccgtgtactgtggaggggtcacctccggtctc
tcagatcagctgatgaggcagactttctctcctttcggacagatcatggagatcagggtc
ttcccagataagggctactcattcgtgaggttcgattctcacgagagcgccgcccacgcc
atagtgtccgtgaacgggacgtgcatcgagggccacacagtgaagtgctactggggaaaa
gaaaccgcagacatgagggccatgcagcagatggccatgccccagagtaacccggcgtac
gcggctcagccgtatggacagtggggtcagtcatacggtaatggccagcagatggggcag
tacgtccctaacggctggcagatgccaacgtacggagtgtacggtcaggcctggaaccaa
caaggctacaagtaa
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