Silurus meridionalis (southern catfish): 124381016
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Entry
124381016 CDS
T08004
Symbol
cdk7
Name
(RefSeq) cyclin-dependent kinase 7
KO
K02202
cyclin-dependent kinase 7 [EC:
2.7.11.22
2.7.11.23
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03022
Basal transcription factors
smeo03420
Nucleotide excision repair
smeo04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124381016 (cdk7)
09124 Replication and repair
03420 Nucleotide excision repair
124381016 (cdk7)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
124381016 (cdk7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smeo01001
]
124381016 (cdk7)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124381016 (cdk7)
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124381016 (cdk7)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124381016 (cdk7)
Enzymes [BR:
smeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.22 cyclin-dependent kinase
124381016 (cdk7)
2.7.11.23 [RNA-polymerase]-subunit kinase
124381016 (cdk7)
Protein kinases [BR:
smeo01001
]
Serine/threonine kinases: CMGC group
CDK family
124381016 (cdk7)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124381016 (cdk7)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Capping factors
124381016 (cdk7)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124381016 (cdk7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
ABC1
Kinase-like
Seadorna_VP7
Haspin_kinase
Pkinase_fungal
Motif
Other DBs
NCBI-GeneID:
124381016
NCBI-ProteinID:
XP_046698333
LinkDB
All DBs
Position
27:complement(7211523..7223150)
Genome browser
AA seq
345 aa
AA seq
DB search
MALDVRSRAKRYEKLDFLGEGQFATVYKARDKTNDTIVAIKKIKVGHRTEAKDGINRTAL
REIKLLQELSHPNIIGLLDAFGHKSNISLVFDYMETDLEVIIKDTSLVLTPANIKAYILM
TLQGLEYLHHHWILHRDLKPNNLLLDESGVLKLADFGLAKAFGSPNRVYTHQVVTRWYRA
PELLFGARMYGVGVDMWAVGCILAELLLRLPFLAGDSDLDQLTKIFETLGTPTEENWPGM
TNLPDYISFKMFPGTPLEHIFSAASDDLLDLLKGLFTFNPCARLTASRALKMQYFSQKPA
PTPGSQLPRPNYSAEALKEKENLAIGIKRKRDGIEQGTLKKKLVF
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggctttggatgtcagatccagggcgaaacgatacgaaaagttggactttctcggagag
ggtcagtttgcaacagtttacaaggcgagagacaaaacaaacgacaccattgttgcgatt
aaaaagattaaagtcggacacagaacagaggcaaaagatggaatcaacagaacagccctc
cgagaaatcaagctgctgcaggagttgagtcatcccaatattattggactccttgatgcc
tttggtcacaaatccaacatcagtcttgtgtttgactacatggagactgacctggaggtt
ataataaaggacacaagtcttgtactgacaccagccaacattaaagcctacatcctaatg
acactgcagggtctggagtacttacaccatcactggatcttacacagggatctgaagcca
aataatttactgctagatgaatctggggttctaaaacttgctgattttggattggctaaa
gcatttgggagtcctaacagagtttatacacatcaagttgtgaccagatggtaccgtgcc
ccagagctgctcttcggggccaggatgtacggggtgggtgtggatatgtgggctgtgggc
tgcatccttgcagagctcttgctccggctccccttccttgctggagattccgacctggat
cagctgacgaagatatttgaaacactggggactccaacagaagagaactggcctgggatg
accaatctaccagattacatctcatttaaaatgtttcctggcacaccattggagcacatt
ttcagtgcggcgagcgacgacctgttggacctcctgaagggcttgtttacctttaacccc
tgcgctcgtctcacagcctcaagggccttgaagatgcaatacttcagccaaaaaccagcc
cctaccccgggttctcagcttccccgcccgaactattcagcagaagccttaaaagaaaaa
gaaaatcttgccatcggcattaaaagaaaacgcgatggtattgaacaaggaaccctgaag
aaaaagttggtgttttag
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