Silurus meridionalis (southern catfish): 124381152
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Entry
124381152 CDS
T08004
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo02010
ABC transporters
smeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124381152 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124381152 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smeo02000
]
124381152 (abca1a)
Transporters [BR:
smeo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124381152 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
124381152
NCBI-ProteinID:
XP_046698520
LinkDB
All DBs
Position
28:14547135..14572378
Genome browser
AA seq
2267 aa
AA seq
DB search
MVVSTQLKLLLWKNFTCRRRQTIQLLIEIVWPLFIFFILISVRFHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGETPGVVGNFNDSIISRLFTDAKKILLYSQNDK
SFEGYKGLVQALKKLQSKTAGFKLKDFLRDNETLSEFLEQNATLSKHTVQQIVEADINLE
KVLIKGFGVHLRDLCNTTSLEEFVSIADRNVSQMTQKIICQAPADWLNSAENHFLSNLDF
LKPIRKDVRSNPKVVQDVSLATDTLLESLGLLAVELISMKSWSDMRNEILFLTGNVTHSP
NHVYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNDSEPVSAYDNTSTPYCNNM
MKNLESSPISRMIWRALKPLLMGKILYTPDSPATRRIIHEVNKTFQELGVLRDLGGMWEE
MRVKVWDFMENSEEMDLVRTLLQNNASAQFFNAKLRETEWRVEDISRFLSKASEDTRPLG
TGYTWRDIFNETDQAILTISRFMECVNLDKLEPVLTEERLVKKSMLLLDSRKFWAGIVFP
DMQADSSELPTNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSYLQDV
IEHGIIRALTGSKEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAIIIKGI
VYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPGVVY
LFLVSFAIVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYIGFGAKVVA
SLLSPVAFGFGCEYFALFEEQGVGIQWDNLLSSPMQEDNYSLTTSISLMLFDSVLYAIMT
WYIEAVFPGQYGIPRPWYFPLTKSYWCGEKCGWTTASSTNKKENADAVCIEEVASDLEPG
VYIENLVKVYRHGKKLAVDDLTLGFYENQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY
ILGRDIRTDLSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKSEIDQFVKD
LGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR
QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDLDLSL
SSCRNSSSTVSYSKNSLKKDDSVSESSSDAGLGSDHESETTTIDISLISNIIFKHVPTAR
LVEDLGHEITYVLPYEAAKDGAFVELFHEIDDRLIDLSISSYGISDTTLEEIFLKVAKDN
GVDAVTSDGTILPRRHRRHAFGDHQSCLKPFTEDDSFDINDSEGDPESRETDWLGVSDGK
GSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKY
PSLELEPSMYEEQFTFISNDAPEDTHANKLLGSLTDSPAYRGRCSDDGKSGDGSCPIEEN
AWTVPKVPKTISDIFQNGNWSMENPSPLCECSCEKKKKMLPECPPGAGGLPPPQIKVSSL
NTLQNLTGRNISDYLVKTYAQIIGKSLKNKLWVNEFRYGGFSLGAKSLQGLPPSDEISMA
IAHMRVRFNLDRGTAADRFLRGLSSFINNMDTKNNVKIWFNNKGWHSIAAFLNVMNNGIL
RASLPAGLNPAKFAIKAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVV
FLIQERVNKAKHMQFISGVQPLLYWLANFVWDMCNYIVPATLVIIIFVCFQQEAYVSSTN
LPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSN
ETGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKNLF
AMAVEGVVFFCITVLIQYRFCIKSRGYSAHLKPITEEDEDVARERQRILGGGGQNDILEL
RGLTKVYKRKQKPAVDRLCVGIPRGECFGLLGVNGAGKTSTFKMLTGDSVITSGKAYLAG
KSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKLGL
VKYVDKSAGSYSGGNMRKLSTAIALIGGPPVLFLDEPTTGMDPKARRALWNCILGIIKEG
RSVLLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGSEPCLEP
VMELIEQELPGSTLKEKHRNMLQYQLPSSLTSLAKIFSILSKNKEQLHIEDYSVSQTTLD
QVFVNFAKDQSDEDHIKDISVNQSDAVVDFSHLDAFLTDAKAQETVV
NT seq
6804 nt
NT seq
+upstream
nt +downstream
nt
atggttgtctccactcagctcaaactcctgctgtggaagaacttcacctgccgaaggaga
cagaccatccagctgctgattgagatcgtgtggcccctcttcatctttttcattttgata
tccgtgcgtttccattatcctccgtatgagcagcatgaatgtcattttcccaacaaggcc
atgccatcagctggcaccttgccatgggttcaaggaatcatctgcaacgccaataacccc
tgcttcagataccctactcctggagagacccccggtgtggtgggcaacttcaatgactcc
ataatctcccggttgtttactgacgccaagaaaatcctactgtacagccagaacgataag
agttttgaaggctacaagggtctcgtccaagccctgaagaaactccagagcaaaactgca
ggttttaagttgaaggacttcctccgtgataatgaaaccctgtctgagttcctggagcag
aacgcgacgctgagcaaacacaccgtgcagcagatcgtggaagccgacatcaacctggaa
aaagtgctgattaaaggtttcggagtgcatctgagagatctgtgcaacaccacgtcgctg
gaggagttcgtcagcatcgctgatcgcaacgtgtcccagatgacccagaagatcatctgt
caagcgcctgctgattggctgaacagtgcggagaaccacttcctgtccaaccttgacttc
ctgaaacccatacggaaggacgtcagatccaaccctaaagtggtccaggatgtgtctctg
gccaccgatacgctcttggagagtctgggattgttggctgttgagctgataagcatgaag
agttggagtgacatgcggaacgagatcctgttcctgaccggaaacgtcacccattcgccc
aatcacgtgtaccaggccgtgtcacgcatcgtgtgtggacatccagagggtggcggctta
aagatcaagtctctcaactggtacgaagataacaactacaaggctctgttcggtaaccat
aacgacagcgagccggtatccgcctacgacaacacgtccactccatactgcaacaacatg
atgaagaatttggagtcgagtccaatctcacggatgatctggagagcattgaagcctctc
ctcatggggaagatcttatacacgcctgattcacctgctacacgcaggatcatacacgag
gtgaataagacgttccaggagcttggtgttctgcgggatttaggaggaatgtgggaggag
atgagggtgaaagtctgggacttcatggagaacagtgaggagatggaccttgtgcgaact
ctgctccagaataacgccagtgctcagttctttaatgccaagctaagagagacagagtgg
cgagtggaggacatttcacgtttcttgtctaaagcctccgaggacacgcggcccttgggt
acagggtacacctggagagacatctttaacgagacggaccaggccattctcaccatctca
cgcttcatggagtgtgtgaacttggacaagttagagccggtattgaccgaggaacgtctg
gtgaaaaaatccatgctactgcttgacagccgcaagttttgggccggaatcgtgttcccg
gacatgcaagcggattcgtccgagcttcctaccaacgtcaattacaagatccgaatggac
atcgacaacgtggagcgtaccaataagatcaaggacgggtattgggatcctggtcctcgt
gctgacccctttgaggatctacgatacatctggggaggattttcctacctacaggatgtt
attgaacatggtataattcgagctctgacaggcagcaaggaaaaaacgggagtttacatc
cagcagatgccgtatccgtgctacgtggatgatatgttcttgcgtgtgatgagccgctcg
atgccgctcttcatgaccctggcctggatgtactccgtggccatcattattaaaggcatc
gtgtacgaaaaagaggcgcgtctcaaggagaccatgcggattatgggattggataacggt
atattgtggctgagctggttcattagcagcctgatcccactgctcatcagcgccgccctg
ttagttcttatcctgaagatggggaaccttcttccctacagtgacccgggtgtggtttat
ctcttcctggtttccttcgccatagtcaccatcatgcagtgttttctgatcagcacgcta
ttctctcgcgccaacctggcggctgcctgtgggggcatcatctacttcaccctgtacctg
ccctacgtcctgtgtgtggcctggcaagactacatcggtttcggggctaaagtggtcgcg
agcctgttatctccggtagcgttcgggtttggatgcgagtactttgcactgtttgaggag
cagggagtgggcattcagtgggataacttgctatccagccccatgcaggaggacaactac
agcctgaccacctccatctcactcatgctattcgattcggttttgtatgccatcatgacg
tggtacatcgaggctgtcttcccaggtcagtatgggattccccggccgtggtatttcccc
cttaccaaatcttactggtgtggagagaaatgcggctggacaacagcttcatccacaaac
aagaaagaaaatgcagacgcggtgtgcattgaggaggtagcatctgatctggaaccgggt
gtctacatcgagaatctggtgaaggtgtacagacatggcaaaaagctggcagtggatgac
ctcactttggggttctacgagaaccagatcacctccttcttgggccacaatggagcagga
aagaccaccaccatgtctattctgactggcctgttccctcccacatctggcactgcttac
attctgggcagagacattcgtacagatctaagtgccatccgtcagaacttgggagtgtgt
ccacaacacaatgtcctcttcagcatgttgacggtagaagagcacatttggttttacgct
cgtctaaagggcctatcagaggagaaagtgaagtctgagattgatcagtttgttaaagat
ttaggcctccctcacaaacgcaaatctcgcactagtcagctttcaggaggaatgcaaagg
aagctctcggttgcgttggcgtttgtcggcggttcgaaagtcgtgatcctggatgaacct
acagctggggttgatccgtatgctcggaggggcatctgggatctcctgctcaagtatcgt
caaggtcgaaccatcatcctctcgacccaccacatggatgaggcggatattttgggtgac
cgcattgccattatctctcatgggaagctgtgttgtgtgggatcctcccttttcctaaag
actcaactgggcacgggatactacctaacactggtcaagagagatttggacttgtctcta
agctcatgtcgaaactccagcagcaccgtatcctattccaagaacagtctcaagaaggat
gacagcgtctctgaaagcagttctgatgccggccttggcagtgaccacgagagtgaaact
accaccatcgacatctccctgatctccaacatcatcttcaagcacgttcccacagccagg
ctggtggaggatctaggtcatgagatcacatatgtgcttccttatgaagcagcaaaggac
ggtgcttttgtggagcttttccatgagatcgacgatcgtctcattgacctcagcatctcc
agctatggaatttcagacaccacgctcgaggagatcttcttgaaggttgcgaaggataac
ggcgtcgacgctgtaacctcggatggtacgattcttccaagaaggcatcgccggcatgca
tttggtgaccatcagagctgtctgaagcccttcactgaagatgacagctttgatataaat
gattctgaaggtgatccagaatcccgtgagacggattggttaggggtttctgatggaaaa
ggctcgtatcaagtcaaaggttggagtttaaagagacagcagtttgtggctttgctttgg
aaacgtttcctgtacgcacgtcgctctaggaaaggattctttgcgcagattgtacttcca
gctgtgttcgtttgcattgccctggtcttcagtttaattgtaccaccatttggaaagtat
ccgagcctggagctggagcccagcatgtatgaggagcagtttaccttcatcagtaacgat
gcaccggaggacacgcacgctaacaagctactcggctcgttaacggacagtccggcctac
agggggaggtgttcggatgatgggaaatctggagacgggtcgtgccctatcgaagaaaac
gcatggactgttccaaaggttcccaagaccatatcagacatttttcagaatggaaactgg
agcatggaaaacccatcacctctgtgtgagtgcagctgtgagaagaagaagaagatgctt
ccagagtgtcctccgggggcaggaggccttccaccaccacagattaaagtcagcagtttg
aacacactgcagaatctaacagggaggaatatttctgactatctggtcaaaacctacgca
cagattataggaaaaagtttaaagaacaaactctgggtgaacgagttcagatacggtggc
ttctcattgggtgccaagagtttacaaggcctgcctccttcagacgagatctccatggcc
atcgctcacatgcgtgttcgtttcaacttagacagaggcactgcagcagacaggttcctg
agaggtttatcaagcttcatcaacaacatggacaccaagaacaatgtcaagatctggttc
aataacaaagggtggcacagcattgctgctttcctcaacgtgatgaacaacggtatcctg
cgtgccagcctgcctgctgggctaaacccggccaaatttgctatcaaagcttttaaccat
ccactaaacctcactaaagagcagctctctcaggtggccttgatgaccacctcagtcgat
gttctggtctccatctgcgttatctttgctatgtccttcgtcccggccagctttgtggtc
ttcctcatccaggagagagtaaataaagccaaacacatgcaattcatcagcggagttcag
ccgcttctctactggctcgcaaactttgtgtgggatatgtgtaactacattgtccccgca
accctcgtcatcatcatcttcgtgtgcttccagcaggaggcctacgtctcctccaccaac
cttcctgtccttgctcttcttttactgctttatggctggtccataactcctctgatgtac
ccagcatcgttcttctttaagatccccagcacggcttacgtggtcctaaccagcgtcaac
attctcataggaatcaacggcagtgtctccaccttcgtcctggagctttttggcagcaat
gagactggtggcatcaatgacattttgaaaaacgtcttcctgatcttccctcacttctgc
ttgggacgaggcctgatcgatatggtgaagaaccaggccatggctgatgctctggagaga
ttcggtgagaatcgcttccgttctcctctggcgtgggacatggtgggaaagaacctcttc
gctatggcagtggaaggcgtggtcttcttctgtatcacagtgctcatacagtatcgcttc
tgcatcaagtccagaggctatagtgctcatctgaagccgatcaccgaggaggatgaggat
gtggccagagagaggcaaaggattctgggtggaggtggacagaatgatatcctggagctc
agagggctgaccaaggtctataagagaaagcagaaaccagcagtggacagattgtgtgtg
ggaattccacgtggagagtgttttggattgcttggtgttaatggtgctggcaagacgagt
accttcaagatgctgactggagattcggtcatcacgagcggaaaggcttatttagctgga
aagagcgtattgaccgagatcaacgaggtgcatcagaacatgggatactgtcctcagttt
gacgccatcaacgaccttctgaccggccgagagcacctggagttttacgccattttacgt
ggcgtcccagaaaaagaagtgtgtgaggtggcagagtggggaatccgcaaactgggtctg
gtgaaatatgtggacaaatcggcaggaagctacagcggaggaaacatgcgcaaactctcc
acggccatcgctctgatcggaggcccaccagtgttgttcctggacgaacccacaactggt
atggaccccaaagcacgacgtgctctgtggaactgtatcctcggcatcattaaagaggga
cgttccgtccttcttacctcacacagtatggaggagtgtgaggctctgtgcactcgcatg
gccattatggtcaatggcaggttccgttgccttggcagtgttcagcacctaaagaacagg
tttggtgatggctacacgatcatcctgcgcgtggcaggttctgaaccttgtctagagccg
gtgatggagttgatcgagcaggagttaccaggcagcactctgaaggagaaacacaggaac
atgctgcagtaccagcttccatcatcgctcacctcactggccaagatcttcagcatcctg
tccaagaacaaagagcagctccacattgaggactactctgtctcacagaccacactagac
caagttttcgtgaatttcgccaaggaccaaagtgacgaggaccacatcaaagacatttcc
gtgaaccagagcgatgccgtagtggacttttcccatttggatgcttttctcacggacgct
aaagcacaggagactgtggtgtga
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integrated database retrieval system
