Silurus meridionalis (southern catfish): 124381232
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Entry
124381232 CDS
T08004
Symbol
usp9
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
smeo01002
]
124381232 (usp9)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124381232 (usp9)
Enzymes [BR:
smeo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
124381232 (usp9)
Peptidases and inhibitors [BR:
smeo01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
124381232 (usp9)
Ubiquitin system [BR:
smeo04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
124381232 (usp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
DUF2014
Motif
Other DBs
NCBI-GeneID:
124381232
NCBI-ProteinID:
XP_046698629
LinkDB
All DBs
Position
3:15690996..15719406
Genome browser
AA seq
2607 aa
AA seq
DB search
MTATTRGSPMGGNESQEQGQAPDGQSQPPLPQNQTSTPTTSNENSPVSPPDEQVQGDCTG
QLEEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLCKKGLDVKCEACQ
RFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLMELCVTKLSQDWFPLLELLAMA
TNPHCKFHIYNGTRPSETVPAGVQLAEDELFARPPDPRSPKGWLVDLVNKFGTLNGFQIL
HDRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELKKE
AKNEAKNDALSMIIKSLKNLASRVPGQEETVKNMEIFRLKMILRLLQISSFNGKMNALNE
VNKVISSVSYYTHRHGNPEEAEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKIL
RFVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKESWT
NASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILD
YSCSQDRDTQKIQWIDRFIEELRSNDKWVIPALKQIREICSLFGEAPQNLRRKIPINLTS
LASQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMENMRQFSKAEHTDFDPQTVRP
GSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKL
MGDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRVYMMD
DLELIGLDYLWRVVIQGSDDIANRAIDLLKEIYTNLGPKLQATQVEIHEDFIQSCFDRLK
ASYDTLCVLDGDKDSINCARQEAIRMVRVLTVLREYITECDSDYHEERTILPMSRAFRGK
HITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRCILNRIKANSAHTKIELFIGGDIIDPA
DDRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVES
CLPGVIMSLHLRYISFLWQVADLGCNLNMPLLRDGARVLMKLMPPDNTTVENLRAICLDH
AKLGESSLSPTLDSRFFGPSPSQVLYLIEVVYALLMPASGTLGEDASDFQYNFLRSGGLP
LVLSMLTRNNFLPNADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPVAEGNIPV
SPINQATHDQALVLQSALQNIPNPSAECMLRNVAIRLAQQISDENFFQASKYIPDISVIR
AVQKIVWASGCGSIQLVFSSIEEVSNIYEKTNAGNEPDAEDEQVCCEALEVMTLCFALIP
TALDALSKEKAWQTFIIDLLLHCQSKLVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTV
LGSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIKDEVRRTGET
GVEETILEGHIGVTKELLAFQTAEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKT
GEFPPEQAIPVCSTPATITAGFELLVALAVGCVRNLRQIVDILTDMYYSGGEALAEWEYL
PPVGPRPTKGFVGLKNAGATCYMNSVIQQLYMIPPIRNGILAIEGTGSDVDDDMSGDEKQ
DNESNVDPRDEVFSYHHQFDDKPSLSKAEDRKEYNIGVLRHLQVIFGHLASSRLQYYVPR
GFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQ
GCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLL
IKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGSDVHPENQ
VIQQNEPSEPEPPCSSRYRLVGVLVHSGQASGGHYYSYIIQRNGSGTEGETNRWYKFDDG
DVTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDG
ELIKYISELSLSSKPHQIKMPPAIECSVRKQNVQFMHSRMQYSLEYFQFIKKLLTCNSVY
LNPPPGQDHLLPEAEEMSKISIQLAARFLFSTGFHTKKSVRGPASDWYDALCILLRHSKN
VRCWFAHSALFSNPNRFSEYLLECPSAEVRGAFSKLIVFIAHFSLQDGPYPSPVASPGPS
SQGCDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLGVPA
TFMLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVTSRMQSSINGNPPLANPYGDPS
LTQPIMPLHQLVAEILFVRTSYVKKIIEDCSNSEETIKLLRFCCWENPQFSSTVLSELLW
QVAYSYTYELRPYLDLLLQILLVEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKR
AYQCIKCMVALFTNCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNAQYTYNNWS
PPVQSNETSNGYFLERSHSARMTLAKACELCPEECHLTKHEVVSEEDAGRKLSSPQQLLP
GEVTGQQQHTEQDEQEAPDDQESSPPEDTTLYPHSPGTQFQQQNNLPHGQPYTGPAAQHM
NNPQRPGPRAQENWEPPEEVPPAQTKE
NT seq
7824 nt
NT seq
+upstream
nt +downstream
nt
atgactgccacgactcgtggctcccccatgggggggaatgaaagtcaggagcaaggccaa
gctccggatggtcagtctcagcccccactgccccaaaaccagacatccactcccacaacg
tccaatgagaactctccagtgagtcctccagatgagcaggtccagggcgactgtacaggc
cagctggaggaggaggaggagccagcttttccccacacagacctggccaaactggatgac
atgatcaacagaccccgctgggttgttccagttttgccaaagggtgaattagaagttctt
cttgaagctgctatagatctttgcaaaaaaggactcgatgtcaagtgcgaagcctgccag
agatttttccgtgatggtttgacaatatcgttcaccaaaatactgactgatgaggctgtc
agtggatggaaatttgaaatccataggtgcataatcaacaacacccatcgtcttatggaa
ctgtgtgtgaccaagctctctcaggactggtttcctcttctagagctcttggccatggcc
accaacccccactgcaaatttcacatatacaatggtacccggccctcagagactgtgcct
gctggggtgcagctggctgaagatgagcttttcgctcgcccgcctgaccctcgctctcct
aagggctggttggtggatttagtaaacaaatttggcacattaaacgggtttcaaattctg
cacgatcgattcatgagtggccaagctctgaacgtgcagatcatcgccgcactcataaag
cctttcgggcagtgctacgagtttctcactttgcacacggtgaagaagtacttccttccc
gttatagaaatggttccccagtttctagaaaacctcactgatgaggagctaaaaaaggaa
gccaagaatgaagccaaaaatgatgctctgtctatgataatcaagtcattgaagaacctg
gcttcccgagtaccagggcaagaagaaacagtgaagaacatggaaatatttagattaaaa
atgattcttaggttattgcaaatttcttcttttaatggcaaaatgaatgcactaaatgaa
gtaaataaggtgatctcaagcgtctcgtactacacacaccggcatggcaaccccgaagag
gcagagtggctaacggcagagcgcatggcggagtggattcaacaaaacaacattttgtcc
attgtgctgcgagatagccttcatcagccccagtatgtggagaaactagagaagatcctg
cgctttgtcattaaagagaaagcacttacgcttcaggacctggacaacatttgggctgcc
caggctgggaaacacgaggctattgtcaaaaatgttcacgatctcctagcgaaattagca
tgggatttctcacctgaacaactagaccacctttttgactgttttaaggaaagctggaca
aatgcgagtaaaaagcaacgggagaagttactggaattaattcgtaggcttgcagaagat
gataaagatggtgtgatggcacacaaagtgctcaatctgctgtggaacttggcccatagt
gatgatgttcctgtggatattatggaccaggccctcagtgctcatataaagattttggac
tacagctgttcccaggacagggatacccagaagatccagtggatagaccgcttcattgaa
gagttgcgatcaaatgataaatgggtgattcctgcactgaagcagattcgagagatctgc
agtttgtttggagaggctccacaaaatctcagaaggaaaatacctattaacttaacaagc
ttagcaagtcaaacacagaggagcccacatgttttttatcgccatgaccttattaaccaa
ctccagcacaatcatgcactggtcactctggtagctgagaatctgtctgcatacatggag
aatatgagacagttctccaaagcagagcacacagactttgaccctcagacggtcaggcct
ggaagtcgatacagtcatgtgcaggaggtgcaggagcgattgaactttttgaggtttttg
ctgaaggatgggcagctgtggctctgtgcccctcaggccaaacagatctggaaatgcctg
gcagagaatgcggtgttcctgtgtgatcgtgaagcctgcttcaaatggtactccaaactg
atgggggacgagccggaccttgaccctgacatcaacaaggacttttttgagaacaatgtg
ctccagctggatccctctcttctgactgaaaacggcatgaaatgcttcgagcgcttcttt
aaagcagtgaactgcagagagggcaagctggtggccaagcgccgagtctatatgatggat
gacctggaattgatcggtctggattacctatggagggttgtgattcaaggaagtgatgac
attgctaaccgagcaattgatttacttaaagagatttatacaaaccttggaccaaaattg
caggccactcaggtggagatccatgaagactttattcagtcttgctttgaccggctcaaa
gcctcctatgatacgctttgtgttctggatggggataaggacagcattaactgtgccaga
caggaggccatccgcatggtgcgcgttctcactgttctcagggagtacattacagaatgt
gacagtgactaccatgaggaaaggaccatcttgccaatgtccagagcatttcgtgggaag
cacatcaccctcattgtgcgctttccaaaccaaggtcgacaggtggatgatctggacatc
tggtcccacaccaacgacaccatcggttccgtgagacgctgcattctcaatcgaataaag
gcgaacagcgcacacaccaagatcgagctctttattggtggggacatcatcgatcctgct
gatgacaggaaattgattgggcagctcaatctcaaagacaaaactcttattacagccaag
ctcacgcaagtcagtgccaatatgccttcaagcccagacagttcctctgactcttccacc
ggctctcctgggaaccatggcaaccactatagtgatggaccgaaccctgaagttgagagt
tgtcttcctggagtgataatgtccctgcacttgcgctacatctctttcttgtggcaagtt
gctgacctgggctgcaatctaaacatgcctcttctgcgagatggagctcgggttcttatg
aagctcatgccaccagacaacactacagtggaaaacctgcgagccatttgcttggatcat
gccaaacttggagaaagcagccttagtcccactcttgattctcgattttttggtccatca
ccttcacaagtcctttacttaatagaggtggtttatgccttacttatgccagctagtggc
acacttggagaggatgctagtgacttccagtacaacttcttgaggagcggcggcctacct
ttagtgttaagcatgctgacccgaaataatttccttccaaatgctgacatggagacgcgc
agaggagcctatctcaatgcactaaaaatagccaagctcctgcttacagcggtgggcttt
ggtcacgtgaaagctgtcgctgaagcctgccagcctgtggcagaggggaacatccctgtg
tcacctatcaaccaggccactcatgaccaggcgcttgtgctccagagtgccctgcaaaac
atcccaaacccctcggctgagtgcatgctgcgcaacgtggccatccgtctagctcagcag
atctccgatgagaattttttccaggcctctaagtatatcccagacatcagtgtgatcagg
gcagttcagaagattgtctgggcctctggttgtggttcaattcaacttgttttcagttcc
attgaggaagtcagcaatatctatgagaagactaatgcagggaatgagccagatgcagag
gatgagcaagtgtgctgtgaggccttggaggtcatgaccttgtgttttgcccttattccg
actgcactagatgcacttagcaaagagaaggcatggcagaccttcatcattgatttactg
ttgcactgccagagcaagttggttcgccaaatggcccaagaacagttcttcctcatggcc
actaggtgttgcatgggtcacaggcctcttctgttctttattactcttctcttcactgtt
ttaggtagcactgcaaaagaacgagccaagcacgctggcgattactttaccctcttaagg
cacttgctcaactacgcatataatagcaacatcaatctccctaatgcagaggttcttctc
aataatgagattgattggttaaaaaggatcaaggatgaagttaggagaactggagagact
ggtgtggaagagaccatattagaaggacatattggtgtcacaaaggagctactggcattc
cagacagcagaaaagaagtactatataggttgtgaaaagggaggagctaacctcatcaag
gagcttattgatgacttcatcttcccagcatctaatgtgtacttgcagtacatgaagact
ggagagttcccccctgagcaggctatacctgtttgtagcactcctgccaccataacagct
ggctttgaactcttggtcgcacttgctgttggatgtgttcgcaatctcagacagattgtt
gacatcctaactgacatgtactactcgggtggggaggcacttgcagaatgggagtacttg
ccaccagtaggcccaagacccactaaaggctttgtggggctgaagaatgcaggtgccact
tgttatatgaactcagtcatccaacagctttacatgatcccacccatcagaaacggcatc
ttggctattgagggcacgggcagtgatgtggacgatgacatgtctggggatgagaagcaa
gataatgagagcaatgtcgatccacgtgatgaggtcttcagttatcaccaccagtttgat
gacaagccatcacttagtaaagcagaggacagaaaagagtataacattggagttctgcgc
cacctgcaggtcatctttggacatcttgcttcttccagactgcagtactatgttcccagg
ggcttttggaaacagtttaggttgtggggtgagccagtgaatctgagagaacaacacgat
gccctggagtttttcaattcgcttgtagatagtttagacgaggctttaaaagcactgggc
catcctgccatgctgagtaaagtgctgggaggatcctttgctgatcagaagatctgtcag
ggttgccctcataggtatgaatgtgaggaatcgtttacaacactgaatgtagatattaga
aaccaccagaatctgcttgattccatggagcagtatgtgaagggtgatttgctcgagggt
gctaatgcctaccactgtgaaaaatgcaacaagaaagtggacacagtgaaacgtttgctc
attaagaaactgcctccggtactggccatccaattgaagagatttgattatgactgggaa
cgagagtgtgctattaaatttaatgattactttgagtttccccgggagctggacatggaa
ccctatacagtagctggcgtagccaagctggaaggctctgatgtccaccctgagaatcag
gtcatccagcagaatgaaccctctgagcctgagccaccatgcagctcacgctacaggctc
gtcggagttctggtgcactcgggccaagccagtggtgggcactattactcttacatcata
caaaggaatggcagtggcactgagggagaaaccaatcgctggtacaagtttgacgacggc
gatgtcacagagtgcaagatggatgatgacgaggagatgaagaaccagtgcttcggggga
gagtacatgggcgaagtgttcgaccacatgatgaagcgcatgtcctaccgcaggcagaag
cgctggtggaatgcctacatcctgttctatgagcgtatggactctcttgacaaggacggc
gagctgatcaaatacatctccgagctgtcattaagcagcaagccacatcagatcaagatg
ccaccggccatcgagtgcagtgtacgcaagcagaacgtgcagttcatgcacagccgcatg
cagtacagcctggagtactttcagttcatcaagaaactactaacctgtaatagtgtctat
ctgaacccaccaccagggcaagatcatcttttgcctgaagcagaagaaatgtctaaaatt
agcattcagcttgctgctcgattcctcttcagcacaggatttcataccaagaaatctgtc
cgtggcccagccagtgattggtatgatgccctgtgcatcctccttcgacacagcaagaat
gtacgctgttggtttgcacacagcgccctattttcgaacccaaaccgcttctcggagtac
ttgctcgagtgccctagtgctgaggtgcggggggccttctccaagctcattgtatttatt
gcacatttctctctgcaagacggaccctacccatcacctgttgcctctccaggaccatcc
agtcagggctgtgataatttgagtctgagtgaccacttgttacgcgctgtgctcaacctg
ttacggagagaagtttcggagcatggccgtcacctgcagcagtacttcaacctctttgtc
atgtatgccaacttgggtttggcagagaagacacagctattgaagcttggtgtgccagcc
acgttcatgctggtggctctggatgagggccccggcccacctatcaagtaccagtatgca
gagctggggaaactgtacacggtggtgtcgcagttggtgcgttgctgcgatgtaacatcc
cgtatgcagtcctcaattaatggtaatcctcctcttgccaacccatatggtgatcccagt
ttaactcagcccatcatgcctctgcatcagctggtggctgagatcctgtttgtgcgcacc
agttatgtaaagaagataattgaggattgcagtaactccgaggagaccattaaactgttg
cgcttttgctgctgggagaacccacagttctcctccactgtgctcagtgaactgctatgg
caggttgcttactcctacacatatgaactaaggccttacctggacttgctgctccagatc
ttgcttgttgaagactcttggcagactcacaggatccacaacgtactcaaggggatcccg
gatgaccgcgatggcctgtttgacaccatccagcgctcgaaaaatcactaccagaaaaga
gcttaccagtgcatcaagtgcatggtggctctgttcactaattgctcagttgcctatcag
attcttcagagcaatggagacctaaagagaaagtggacatgggctgtagagtggcttggt
gatgagctagagcgcaggccatatactggcaatgcccagtacacgtataacaactggtca
ccacctgtacagagcaacgagacctccaacggctacttcctggagcgttctcacagtgcc
cgcatgactttagccaaagcttgtgagctgtgcccagaggagtgtcacttaacgaagcac
gaggtggtgtctgaagaggacgcaggccggaagctgtcctcgccacagcagcttttgcca
ggggaagtgacaggccagcagcaacacactgagcaggatgagcaagaggcccctgatgac
caggaatcctctccaccggaagacacgactctgtacccccactctccagggacacagttt
caacagcaaaacaaccttccccacggtcagccgtatactggcccggcagcacagcatatg
aacaatcctcaacgtccaggtccacgagcacaagagaactgggagcccccagaagaggtg
ccacctgcccagacgaaagagtag
DBGET
integrated database retrieval system
