Silurus meridionalis (southern catfish): 124381325
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Entry
124381325 CDS
T08004
Symbol
limch1a
Name
(RefSeq) LIM and calponin homology domains-containing protein 1a isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
124381325 (limch1a)
Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
124381325 (limch1a)
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
124381325
NCBI-ProteinID:
XP_046698811
LinkDB
All DBs
Position
28:complement(4307819..4365984)
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AA seq
1927 aa
AA seq
DB search
MASVEESSGSRPDHHEVTEGSSGAAFQEAQKWIEAVTGKTFVEKDFRSSLENGILLCELL
SSITPGLVKKINRLPTPIAGLDNLTMFLRGCEELGLKGSQLFDPGDLQDMSIRANLTDSD
CSRKLKNVLITIYWLGKTANGCTSYSGPTLNLKEFEGLLSVMKKECVNEEPESPKRSVRD
SGCVDNWESELSDSLSPPRHRREDSFDSLDSFSMQSQPTPSPDTVLRASSDDLDGDQRKL
PDVLKDDMSARRVSFKEPRVAMPFNQYLPNKSNQSTFVSAQLRKRRSDREEERRSCSTST
SPIREEDVGISSETPLVLSSHRTVSWAVVEGAEPQLDEAELKKMKKLEKAGIRVLPASAR
YTSPKVTCVEPNQAKSPSPDIIRRCDNNVLWAEQAHEWDKEDDEDEEGDRKVPDIQKDDL
ASRKARMNQPKPSVAHQFLPSSCSSKDRERWEGIRLSSQHAVMEMLEKMEQDKKSDSDTA
STEASIVTRKDNPFLSPHRIKTDEEEESDEDKGRSLLPNVQKDDLARRRTQIGSLPQRDL
RQSLAHTSITQSDFEKWQRLSMTVESSEAASVEVSIVTRKDDEDEQRDTKGGGQAALPNI
QKDDLARRRSQTGALPHRDYQQSLAQTAMTQSDLEKWQRLQMSTENSDLPPLCQSCLAAS
SVKVAHSDPPHCRRRSRGDRKRVVTFGGVTQMENVSWGDERQDEEWRKEGGKDESETLRR
LLSSATVAMPTTGMSSGRERVGGSSTPTSPPKSPQSSIFDPKHHLTLAERETLELRLAEK
VRDEKEYEEQEEEEEKEQQPDLQKDDMMARRTGVFQKTSGRAYNRFLPLPGVKKETRPDE
SVQKESWTVFSDAHLDRNIKTKRFKVGQRVEQVEPEPKVPSSAVQKVPEVLDSSSTHVEV
YRDGYNYPDNDDLDKDDMLARRTASYQKPSGNQFNAFLPKPGGVKVKKSVSGQYKSNLKS
SGQETKKTSERSVTQPPADVDDMSRKCPQIMDGQKAGTVGMMGREIDVVGGAQAKSHLPL
PDPDARHTYGLDDDVSLLIFSHKTPSVSDETESVSLIDMRDEEDDVDSQTRHERLHNQYN
KVKEEEDQWQDDLARWKNRRRSASQDLIKKEEERKMMEKLMTSEGGSHRRKSIKTYKEIV
EEKERREQELHELYCQASTPEEKAAILQRYALRFTISDAILEKLQLPKLPSVATHQSIHA
YTLNEEVEISESQTFTKIETDSSGQYLKQTTDAILHTPDLSLIKDSKGSDIQLYPEIPLS
PVRDNKTPEVQLSSAQESKTSEIQLSPVRESKTPEVQLSPVRESKTPEVQLFPVQESKTQ
VQLCPVQKSKAQEDQLSPVLESKTLDVQLSPVQESKTLEVQLFPVQESKTLEVQLSSAQE
FKTPDICLSPSIDPKSLEVPLSPFRTNKISDVPLSPFRIPPAPSRPVPLLTPKPYSQPKF
NQPSYKQVKNDGLVRVNGDSIIEDTRESPVRPVSFTPISSKPARQSPQQVLEISAGRETT
AQECTQTSPIQKTEHIKDENDSHSCPVKKSIEDDTSKILTDPELTGKQTAMDAAVKRNCV
VTTTIVTELRETHSLPAIDASIADQMSCSDEFSQKSDEISFTESRKADITSYSEGFDFTS
ECIETPILNLAKRVNHWTWDPNEERKRQERWQQEQERLLQEKYQQEQERLKQEWEKAQKE
VEEEERKHNEEERRILEETVTPLTPHSSSGVKESSPISKTPRDTIVLSLADWERKQEMLE
REAKMNQRNGLEHRSDETEAVSPPQQITQAADLQEIQSATPQLQFIQDGSSSRKSESRQE
WKKTASLDRNVSPSQSQPPRMRRSGSYEHILGIHTSPSSQDTSPSSSDRSVSAKKLCSSC
AQPLGKGAAMIIDTLGLYFHIQCFKCGVCKGLLGDSSTGTDVRIRNGVLNCHSCYMKSRA
AGQPTTL
NT seq
5784 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgtcgaggagagctctggttcccggccggatcaccacgaagtgaccgagggc
agctcgggagcagcttttcaggaggcgcagaaatggattgaggctgtgacagggaaaacg
tttgttgagaaggacttcaggagcagcctggagaacggcattctgctgtgcgagttgctg
agttccatcacaccaggacttgtgaagaagattaacagactcccaacccctattgcagga
ctggataatctcaccatgttcctgaggggatgtgaggaattaggactaaagggatcacaa
ctgtttgacccaggagacctgcaggacatgtctatacgtgccaacttaacggattcagac
tgcagtcggaagctgaagaatgtcctgatcactatttactggctgggcaaaactgcaaac
ggttgtacgtcatatagtggtccgacgcttaacctaaaagagtttgaaggccttttatct
gtgatgaagaaggagtgtgtaaatgaagaacctgagtctcctaagcgcagcgtacgggac
agcggatgcgtggacaactgggaatctgaactttctgattcgttgtcacctccgaggcat
agacgagaggattcctttgacagtctggactctttcagcatgcaatcgcagcccacgcct
tccccagatacagtgctccgtgctagcagtgatgatttggatggcgatcagcggaagttg
ccagatgtgctcaaggacgacatgtctgcccgccgtgtctccttcaaagagccccgtgtt
gctatgccttttaaccagtacctccccaacaagagtaatcaaagcacctttgtgtctgct
caactgaggaagaggaggagcgaccgtgaagaagagcgcaggagttgcagcacctccact
tcccctattagagaggaggatgttggcatttcaagcgagacgccgcttgtcctcagttcc
catagaactgtgagctgggcagttgtggaaggggcggagcctcagctggatgaggcagaa
cttaagaagatgaaaaagttagagaaggcggggattagagtgttgccagcgtctgcgaga
tacaccagtcctaaggtgacttgtgtagagcccaatcaggctaaatcaccgtcacccgac
atcatccgacgctgtgataacaacgtcctgtgggctgaacaagcccacgagtgggacaag
gaggatgatgaggatgaggaaggagacagaaaagtgccggatatccaaaaggacgacctc
gcgtcccggaaggcgcgcatgaaccaaccgaaacccagtgttgctcatcagtttctgccg
agctcgtgcagcagtaaggaccgtgagcgctgggagggaattaggctttcctcccagcat
gctgtcatggagatgttggagaaaatggagcaggacaagaagagtgattctgacaccgct
tccactgaggcgtcaattgtaactcgtaaggacaaccccttcctcagtcctcacaggata
aagacggatgaggaggaagagagtgatgaggacaagggacgttcacttctcccaaacgtg
cagaaggacgatctagcaaggaggcgcactcaaatcggatcccttccacaaagggatttg
cgtcagtcattggcccatacgagtatcactcaatcagattttgagaagtggcaaagactt
tccatgactgttgaaagcagtgaggccgcgtcggttgaagtttcaatcgtaactcgtaag
gacgatgaggatgagcagagagacaccaagggaggtggacaggctgctttgcctaatata
cagaaagatgatctggctaggaggcggagtcagactggggccctcccacaccgggattat
cagcagtcattggctcagacggccatgacgcagtcagacctggagaagtggcagagactg
cagatgagcacagagaacagtgacttgccccctctgtgtcagtcctgcctcgctgcctcc
tctgtaaaggttgcccacagtgacccgcctcattgccggcgacgttcccgtggcgaccgc
aagcgtgttgtgacgtttgggggcgtgactcagatggagaacgtttcctggggagatgaa
agacaggatgaagagtggagaaaagagggtgggaaggatgagtcagagacgctgcgacgc
ctcctctcctcagcaactgttgccatgcccaccactgggatgagctcagggcgagagaga
gttggaggctcaagtaccccaacctcaccccccaagtccccacaatcctctatttttgac
cccaaacaccatttgacccttgctgagcgtgagacccttgagctgaggctggcagagaaa
gtgagggatgagaaggagtatgaggaacaggaggaggaggaagagaaagaacaacagcct
gacttgcagaaggacgacatgatggcccggcggacgggggtgtttcagaaaacgagtgga
cgtgcctataataggttcctgccactgcctggtgttaagaaagaaacacgtccagatgag
tcggttcaaaaagagagctggactgttttcagtgatgcgcacttggatagaaacataaaa
acaaagcgattcaaagtgggacaaagagttgaacaggtagaacctgagccaaaggtacca
tcatctgctgttcaaaaagtgccagaagttcttgattcttcttcgactcatgttgaggtt
tatcgtgacggttacaattatcctgataatgatgacctggacaaagatgacatgcttgca
aggaggacagcatcataccagaaaccgagtggaaatcagtttaacgcctttctgcctaaa
cctgggggtgtgaaagtaaagaagtctgtgagtgggcaatacaagtcgaacttgaaatcc
agtggacaagaaacaaaaaaaacctcagagagatctgtgacccaacccccagcagatgtt
gatgacatgtcaagaaaatgccctcaaattatggatgggcagaaagcaggcactgtaggc
atgatgggaagggaaattgatgttgtgggcggggcccaggccaaaagtcatttaccttta
cctgacccggatgcacggcacacatatggcctggatgatgatgtttcccttttgatattc
agtcacaagactcctagtgtttctgatgaaaccgagagcgtcagtttgattgacatgcgt
gacgaagaggacgatgtggacagccaaacacgacacgagaggctgcacaaccagtacaac
aaagtcaaagaggaagaggaccagtggcaggatgacctagctcggtggaaaaaccggagg
cgcagtgcctctcaggacctgatcaagaaagaggaggagcgtaaaatgatggagaaactg
atgacgtcagagggaggttctcatcgcaggaagagcatcaaaacctacaaagagattgta
gaggagaaggagcgtcgagagcaggagctgcacgagttatactgccaagcctcgaccccc
gaagagaaagcagccatattacagcgctatgctctccgcttcaccatcagcgatgccata
ttggagaaactccagcttccaaaactcccttctgttgcaacacatcagtctatacatgca
tacacactgaatgaagaagtcgaaatttcagagtcacagactttcaccaaaatagaaaca
gattccagcgggcagtatctgaaacagacaacagacgctatattgcacactccagattta
tcactaattaaagactctaaagggtcagacatccaactttatccagaaatccctctctca
ccagtcagagacaacaaaactccagaagtccaactttcttcagctcaagaatccaaaact
tcagaaatccaactttctccagtcagagaatccaaaactccagaagtccaactttctcca
gtccgagaatccaaaactccagaagtccaactttttccagtccaagaatccaaaactcaa
gttcaactctgtccagtccaaaaatccaaagcgcaagaagatcaactctctccagtccta
gaatccaaaactttggatgtccaactttctccagtccaagaatccaaaaccctggaagtc
caactctttccagttcaagaatccaaaacattggaagtccaactttcttcagctcaagaa
tttaaaaccccagatatttgtctctcaccttctattgaccctaaatcattagaagtccct
ctttctcccttcaggacaaacaaaatctcagatgtcccactctcgccttttcggatacca
cctgcaccatccaggcctgttccattactaacaccgaagccatacagccagcccaaattt
aatcagccttcctataagcaagttaagaatgatggactggtgcgtgtgaatggtgactcc
attatagaggacacaagagaaagtccagtgagaccagtctccttcaccccgatatcatca
aaaccagcaagacaaagtccgcagcaagttttggaaatctcagcaggacgtgaaaccaca
gctcaagagtgcactcagacttcacccattcaaaaaactgaacatattaaagatgagaat
gatagtcacagctgtcctgttaaaaagagtatagaagacgatacttccaaaatcctcaca
gatccagaactaacaggaaagcagaccgctatggacgcagcagtgaagcgcaactgtgtg
gtgacgacgaccattgtgacggagcttcgagaaacacactcactccccgcaatagacgct
tcgattgctgaccagatgagctgttcagatgaatttagccagaaatctgatgagatttct
ttcaccgagtccagaaaggctgacattacctcctattcagagggctttgacttcaccagc
gaatgtatcgaaaccccgatattgaaccttgcaaagagggtcaatcactggacgtgggac
cctaacgaagagcgtaaacggcaggagaggtggcagcaggagcaggagcgcctgctacag
gagaagtatcagcaggaacaggagcgcctgaagcaggagtgggagaaagctcaaaaggaa
gttgaagaagaggaaaggaaacacaacgaagaggagagacggatcttagaggaaacggtg
accccgctgaccccgcactcatcctctggtgtgaaagaatcttcgcccatttccaaaacc
cctcgcgacaccattgtgttgtcactggccgactgggagaggaaacaggaaatgctggag
agagaggcaaagatgaaccagaggaatggtttagagcacaggtctgatgaaacagaagcg
gtgtcaccgccacagcagatcacccaggcagcagaccttcaggagattcagtcagctaca
ccacagttgcagttcatacaggatgggtcttcaagccgtaaatctgagagcaggcaggag
tggaaaaaaacagcctccctggaccggaacgtgagcccttcacagagccagcctcccagg
atgaggaggtctgggtcgtacgaacacattttagggatacacacatctccatcatcacaa
gacacatcaccatcatcttcagacaggtcagtgagtgcgaagaagctgtgctccagctgt
gcacagccactggggaaaggagcagctatgatcatcgacactttgggactttacttccac
atccagtgttttaagtgtggagtgtgtaaagggctacttggtgactcgagcacagggacc
gatgtccggatccggaatggtgtcctcaactgtcattcgtgctacatgaaatctcgtgct
gctggtcaacccactactttataa
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