Silurus meridionalis (southern catfish): 124381372
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Entry
124381372 CDS
T08004
Symbol
ptprdb
Name
(RefSeq) LOW QUALITY PROTEIN: protein tyrosine phosphatase receptor type Db
KO
K06777
receptor-type tyrosine-protein phosphatase delta [EC:
3.1.3.48
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
124381372 (ptprdb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124381372 (ptprdb)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124381372 (ptprdb)
Enzymes [BR:
smeo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
124381372 (ptprdb)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
124381372 (ptprdb)
Cell adhesion molecules [BR:
smeo04515
]
Immunoglobulin superfamily
Type II RPTP family
124381372 (ptprdb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_2
ig
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
PTP-SAK
Tc-R-P
DSPc
V-set
Y_phosphatase3
PTPlike_phytase
PTP-NADK
C2-set_2
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
124381372
NCBI-ProteinID:
XP_046698908
LinkDB
All DBs
Position
28:4198839..4276868
Genome browser
AA seq
1523 aa
AA seq
DB search
MRRANERMARGHMICKAAIQLVLPMLLSVLPVTHTQSPPRFTRTPTDQTGVQGGVASFMC
QATGDPQPRISWSRNGKKVTNQRFETIEFEDGSGSVLRVQPLRTPRDEAIYECVASNDVG
EISASTRLTVLREDQLPPGFPSIDMGPQLKVVERSRTATMLCAASGTPDPEITWFKDFLP
IDTQTHGRIKQLRSESFGGTPIRGALQIDRSEETDQGKYECVAMNSEGTRYSTPANLYVR
ELRDVRRIPPRFSVPPMDYEVMPGGGVNITCQAVGVPMPYVKWMLGTEDLTPEDDMPIGK
NVLELTDVRQSANYTCVAMSTLGVIETVAQITVKALPSPPGAPVVMERSATSITLMWDSG
NPLPVSYYIIQHRPASSSDPFKEIDAVATTRYSVGGLSPYSHYHFRVIAVNSIGRGPPSP
TIEARTAEQAPSSAPRRVRGRMLSVSTAMVQWEEPEEANGQVVGYRVYYTSDSSLHVNQW
EKEMVRGANFLTIQNLTPNKTYFIRVLAFTAVGDGPLSSDLHIIAKTGVPSQPTELKAEV
KSETSVLLTWLPPAHSGTDAIIGYELIYRLGDQPEQKIVFEPSSSYVLKNLKPFSTYSFQ
LAARSKHGVGAFTSELSVQTPQTLFAVNFHVKAAMKSSVWLVWEPRTAQNKPSTFIISYG
DGHKLEVDGRLGLQRITELKPQSIYTFLLSNKADGSEGLQHRADAMTAPNLLLRKPQLME
KSSSESTATLQLPSVHTHVPVRGFYIIVISLKRQRGGNFQNPWSDPDEMNLDEILKMING
TSRSVRLRRQAEPKPYISAYFPNLPSEFRLGDGRVYGVFLNRLLLNGQEYVCFVLAILEL
GQNTIYSTSPFSDPVAFSDMEPQPIVDEEEGLLWVVGPVLAVIFIISIVILILLFKSKPD
RKRAELEGRKCSFPSSGKAMSSQHPSDPVELRRINFPTPGMTSHPPVPISELPSYIERKK
ASEGLRFSQEYEVLYXPGQQFSWEHSNLDINKPKNRYANVIAYDHTRVVLSNSDGQPGGD
YINANFIDGYRRQGAYIATQGPMPDTISDFWRMVWEQHTANIIMITKLEEKSRNKCDQYW
PSRGTETYGQMQVSVLDTVELAAYCVRTFALFKSGSSEKREVRQFQFTAWPDHGVPEHPT
PFLAFLRRVKACNPPDAGPIVVHCSAGVGRTGCFIVIDAMLERVKQEKTVDVYGHVTLMR
SQRNYMVQTEEQYVFIYDALLEAVMCGNTEVPARNLYAYIQRLTQAEPPDNISAMEHEFK
RLANARAHNSRFVSANLPCNKFKNRLVNIMPYESTRVGLQPIRGVEGSDYVNASFIDGYR
QQRAYIATQGPLAETAEDYWRMLWEHNSTIVVMLTKLREMGREKCHQYWPSERSARYQYF
VVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHK
TKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQT
EEQYQFCYRAALEYLGSFDHYAT
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgagacgagccaatgagaggatggccagaggtcacatgatctgcaaagccgccatccag
ctggttctgccaatgctgctgagtgtgctgccagtcacacacactcaaagtccacctcgt
tttacccgtacacccactgaccaaacaggcgtgcagggtggggtggcctcgtttatgtgc
caggcaacaggagacccacaacctcgaatctcctggagcagaaatggcaagaaagtcacc
aaccagagatttgagacgattgagtttgaggacggctccggctcggtcttgcgcgtgcag
ccgttgcggaccccacgtgatgaagcgatatacgagtgtgtggcgtctaacgacgtcggc
gagatcagcgcctccacccggctcacggtgctgcgcgaggaccagcttcctcctggcttc
ccgtctatagacatgggtcctcagcttaaggtggtggaacgttctcgcacagccaccatg
ctgtgtgcagccagcggaactcctgacccagagatcacatggtttaaagactttcttccc
atcgacacccaaactcacggacgaatcaaacagctgcgctcagagtcctttgggggtaca
ccaatcagaggtgcactgcagatcgatcggagtgaagaaaccgatcaagggaaatacgag
tgcgtggctatgaatagtgaggggacgcgatactcgacacccgctaacctttacgtcaga
gagctgagagatgtgcgccggatccctccacgcttctctgtgccgcctatggattacgaa
gtgatgcccggaggaggggtgaacatcacatgccaggcggtgggcgttcccatgccatat
gtgaagtggatgcttggaacggaggacctgactccagaggatgacatgcctatcggaaag
aacgtgctagaactcacggacgtgcggcagtcagccaattacacctgcgtggcgatgtcc
actcttggcgtcattgaaaccgtggcacagatcacagtcaaagccctcccaagtcctcca
ggagctccagttgtcatggaacgttcagccaccagcataaccttaatgtgggacagcggg
aacccacttcctgtttcctattacatcatccagcacagacctgcgtcctccagtgaccct
tttaaagagattgacgccgtggcgacgacacggtacagcgtcggcggactcagcccctac
tcgcactatcacttccgggtcatagctgtaaattcgatcggccgcggacctccgagtccg
acaatagaagcgcggacggcagagcaagccccgagctcggcgccgcgcagggtcagaggt
cgcatgcttagtgtctccacagcaatggtgcagtgggaggagccagaggaggcgaacgga
caggtggtcggttatcgggtgtactacacctccgattcttcactgcacgtcaaccaatgg
gagaaggagatggtgcgtggagcaaattttctgacaatacagaatctaacgccaaacaag
acctatttcatcagagttctggctttcactgctgtgggagatggtcctctctccagcgac
ctgcacatcattgccaaaacaggagttccttctcagcccacagagctgaaagcagaggtg
aagtcagagacgagcgtcctgctcacctggctgccaccggctcacagcggcaccgatgca
atcataggatatgaactcatatacagactcggagaccagcctgagcagaagatcgtgttc
gagccgagctccagctacgtgctaaagaatctgaagcccttctccacctacagctttcag
ttagcagcacgtagtaaacacggcgtgggggccttcaccagcgagctcagcgtacagaca
ccacaaaccctgtttgctgtgaacttccatgtaaaagctgctatgaagagttcagtatgg
cttgtctgggagccacgaactgcacaaaacaaaccctcgacttttatcatctcatacggt
gatggtcacaaactggaagtagacgggcgtctcgggctgcagcggatcaccgagttaaag
ccgcagtcgatctacacgttcctcctgagtaataaagcggatggcagtgagggcctgcag
caccgtgccgacgccatgaccgctccgaacctgctgctcagaaaacctcaactaatggag
aagagcagctctgagagcacggccacactgcagctgccctcggtgcacacacacgtccct
gtcagaggtttctacatcattgtcatctcactgaagaggcagagaggaggaaacttccag
aatccttggagtgatccagatgaaatgaatttagatgagattctgaagatgatcaacggt
acgagccgatcggtacgcttacggaggcaggccgaaccgaagccatacatcagtgcctac
tttccgaatcttccgtccgagtttaggctgggagacgggcgtgtgtatggagtgtttctg
aaccgactgcttctcaacgggcaggaatatgtctgtttcgtgctcgctattttagagctg
ggacagaatactatttactcgaccagcccgttttcggaccctgtggccttctcagacatg
gagccccaaccaatcgtggatgaagaggaggggctgctttgggtggtggggcctgtgctt
gctgtcatcttcatcatcagcatagtcatcctcatccttctgtttaagagcaaaccggac
aggaagcgggcagagttagagggcagaaagtgcagtttcccaagcagtggcaaagccatg
agctctcagcatccatcagaccccgtggaactccgcagaatcaacttcccaacacccggt
atgaccagtcatcctccagttcccatctcagaattacccagttacatagagagaaagaaa
gccagtgagggcctgaggttctcacaggagtatgaggtactctattgacctgggcagcag
ttctcttgggagcactcaaacctggacattaataaaccaaagaatcgctatgcaaatgtc
atcgcctacgaccacaccagagtagtgctgtctaacagtgatggtcagccaggtggcgat
tacatcaacgccaatttcatcgacgggtaccgacgacaaggcgcctacatcgccacacag
gggcccatgccagataccatcagtgacttctggaggatggtgtgggagcagcacacggca
aacatcattatgataaccaaattggaggagaaatcaaggaataagtgtgatcagtactgg
ccgagtcgaggcacagagacgtacggccaaatgcaggtgtctgtgctcgacaccgtggag
cttgctgcttactgtgtcaggactttcgcactctttaagagtggcagcagtgagaagagg
gaggtccgccagtttcagttcacagcgtggcctgatcacggtgtacctgagcaccctaca
ccattcctggccttcctgcgcagagtcaaagcctgtaatcctccagacgctgggcctatc
gtagtgcactgcagtgcgggcgtagggcggaccggctgcttcatcgtgatcgatgccatg
ctggagcgcgtgaagcaggaaaagacggttgacgtgtacggccacgtgacactgatgcgc
tctcagagaaactacatggtgcagacagaagagcagtacgtgttcatatacgacgcgctg
ctggaagccgtgatgtgcggcaacacggaggtgcccgcgcgcaacctctacgcgtacatc
cagagactcacacaggctgagcctcctgacaacatcagcgccatggagcacgagtttaaa
aggttagcgaacgcgagagcacacaactcccggtttgtgagtgccaacctgccctgcaac
aagtttaaaaacaggctggtgaacatcatgccgtacgagagcacacgtgtgggactgcag
cccatccgaggagtggagggttcggactacgtcaatgccagctttatagacggttatagg
cagcagagggcgtatattgccacgcaaggtcctctggctgagacagcagaagattactgg
agaatgctgtgggaacacaactccactattgtagtgatgctcactaaacttcgagagatg
ggaagggagaagtgccaccaatactggccttcagaaaggtcagcacgctatcagtacttt
gtggtggaccccatggctgagtacaatatgccacagtacatcctgcgagagtttaaagtg
actgatgccagggatggccagtccagaactgttcgccagttccagtttaccgattggccg
gaacagggcgtgccaaagtctggcgaaggcttcatagactttatcggccaagtgcacaag
acaaaagagcagtttggtcaagacggaccaataacggtacactgcagtgctggtgttggg
aggacaggtgtctttatcacgttgagcatagtgctggagaggatgcgttatgaaggagtg
gtcgacatcttccaaactgtcaaaatgctgcgaacacagagaccagccatggtgcagacg
gaggaacagtaccagttttgctatcgtgcagcactggagtacttgggcagtttcgatcac
tatgcaacataa
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integrated database retrieval system
