Silurus meridionalis (southern catfish): 124381411
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Entry
124381411 CDS
T08004
Symbol
tbc1d1
Name
(RefSeq) LOW QUALITY PROTEIN: TBC1 domain family member 1
KO
K18341
TBC1 domain family member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124381411 (tbc1d1)
Membrane trafficking [BR:
smeo04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
124381411 (tbc1d1)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
124381411 (tbc1d1)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
124381411 (tbc1d1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
DUF3350
PID
PH_trem
DUF2594
Shugoshin_N
Motif
Other DBs
NCBI-GeneID:
124381411
NCBI-ProteinID:
XP_046698973
LinkDB
All DBs
Position
28:complement(2411101..2452373)
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AA seq
1289 aa
AA seq
DB search
MEGICFEVKPRGNSTSSSKSHQEGSGGEDEKEVEIQYRLTLVGSLAIHPQTTMTMLPWVV
AEIRRPRLKERSFSTKISGPQALEMRDCPVVLRISCSWVRCVMGVACAGDPWDPLRHTVL
FQQRPHRVAKLIHNSREPSYFGCLIREETSATCYVFRCHDEHKVPEIISTLRQASKSSAR
QEDTPTTAAVTQTPGECNQDAGRQDAADSATAFSKKFEVLFCGRAVVARKNAPPALIDEC
IEKFSRANASNTLAAGIRRAFSLTQVMNGGNEGTDGGGKRPLFFRKDPSFPSLQALDENG
LSPELQRRAANGAAGVQPTSLQENRTMLFMIGRSQIFLVSPDSKKVAIEKSFXEISFCSQ
GIRHVDHFGFICRESDDGGSCQFVCYVFQCTDEALVDEIMLTLKQAFSVAALQKSSRTQS
LQCDSCPMQQLHRLCDHIEGLTAPKAKLELQKHVASLDNQEQACVFETTLKARPKSDQEE
NELVVSCLRQLYEERQKTHTHTHLTQTKQEAPLVCEETCFDGNMSSSRLRLEQLKSRAKR
SLTESLEGIWKSNNRSRLQKESSENPSPNSTLGSNTHQDMISAEPASLPILLLPSSPLRS
HNSTGDLKRLEDEDHEDDEVQAPSFRRRASTISHSPSMSSSSLSIPNEQVTPGTKPKLVR
HYSVSTDSPHQSKSTPAGDSSASFSSSSTSASSSHLSFSSTPAYARLMKPRAFEQLTKPL
KSGLRARLSSSSSVPNFLKFLAPVEEHDDSCLSPSAHRDVAALSSPGAVCVVGQDSPLRH
RRHSWRQQIFLRVATPQKSSDTAERGETSLEVGGRLAVGGGAGGGDSALGPVPEERRKRS
REELRELWKKAILQQILLLRMERENQKLQASESDLQSRRLKLDYEEITPCLKDVTLVWEK
MLSTAGRAKVKFDTEKIHTAVGQGVPRQHRGEIWKFLSEQYLLRQQVPSTKKPPNNNVPY
KELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNLLKAYSLLDPEVGYCQGLS
FVAGVLLLHMSEEEAFNMLKFLMYDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRELYSH
LEQHEIGPSLYAAPWFLTAFASHFPLGFVARVFDMLFLQGSEVIFKVALSLLGSHKPLIL
QHDNLESIVDFIKSTLPNLGLVQMEKTITQVFEMDISKQLQAYEVEYHVLQDELLDGPST
LSQSQRTAQLEKTNGSLRQQNLDLLEEVQGAHARIRFLESHVEGLMQSEAVLRVELTCLQ
QEHSDLQHTVTQLQALLSNHGIQYTPAPS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggagggcatctgctttgaggtgaaaccccggggcaactctacttcttcatccaagtcg
caccaggaaggatcaggaggtgaagatgaaaaggaggtggagatccagtacaggttaacg
ttggtgggctcgttagccatccacccgcagaccacgatgactatgctgccctgggtggtg
gctgagatacgcaggcctcggctgaaggaacggagcttcagcacaaaaatctctgggcct
caagctctcgagatgcgcgactgtccggtggtgttgcggatctcgtgttcttgggtgcga
tgtgtgatgggcgtggcctgtgcaggagacccctgggacccactgagacacacggtcctt
tttcaacagcggccgcatcgagtcgctaaactcatccacaacagccgagagccgagttac
ttcggctgtctgattcgggaggaaaccagcgccacctgctacgtgttccgctgccatgac
gaacacaaggtcccagagatcatcagcactttgaggcaggccagtaaaagctccgcccgc
caggaggacacgcccaccactgccgccgtcacccaaacccccggcgagtgtaaccaagac
gccggtcggcaggacgccgcggattcggcgacggccttctccaaaaagttcgaggtgctg
ttctgcgggcgtgcggtggtggcccggaagaacgcccccccggcgctgatcgacgagtgc
atcgagaagtttagccgagccaacgcttccaacacgctggcggccggcatcagaagagcc
ttctccctcacgcaggtaatgaacggagggaacgagggaacggacggaggaggaaagagg
ccgctgtttttccggaaagatccgagcttcccgtcgctgcaggcgctggatgagaacggg
ctctcaccggagctgcagcgccgagcagccaacggcgccgcgggggttcagcccaccagc
ctgcaggagaacaggaccatgttattcatgatcggccgctcgcagatattcctagtgagt
cctgacagtaagaaagtggccatcgagaagagcttcnaggaaatttctttctgctcacag
ggtataaggcatgtggatcatttcgggtttatctgtagagagtcggacgatggcggaagc
tgccagtttgtgtgctacgtgttccaatgtacagacgaggctctggtggatgagatcatg
ctgactttgaagcaggcgttctcggtggccgccctgcagaagagcagtaggacccagagc
ctgcagtgtgactcctgccccatgcagcagctgcatcggctctgcgaccacatcgagggt
ctcactgcacccaaggctaagctggagctgcagaagcatgttgcttcactggataatcag
gagcaggcatgtgtgtttgagacgaccctgaaggccagaccgaagtcggaccaggaggaa
aacgaactggtcgtatcttgtttgaggcaactctacgaagagagacagaagacacacacg
cacacacacttaacgcaaacaaaacaggaagctccactggtgtgtgaggagacgtgtttc
gacggcaacatgagcagcagccgattgcgtctggagcagctgaagagtcgggccaaaaga
tcactcacagagtcactggaaggaatatggaagagcaacaataggtcgaggttacagaaa
gagagcagtgagaacccttcgcccaactccacccttggcagcaacactcatcaggatatg
atctctgcggaaccagcgtctctgcccatcctcctcctgccgtccagcccgctccgctcc
cacaactccacaggtgacctgaagcgcctcgaggacgaggaccatgaggacgacgaggtc
caggctccgagcttcagaaggcgagcgagtaccatcagtcactctccgtccatgtcttcc
agcagcctgagcatcccgaacgagcaggtcacgcccgggaccaaacccaaactcgtccgc
cattactccgtcagcaccgactcgcctcaccagagcaagtcgactccggccggtgactct
tctgcttccttctcctcctcctccacttctgcctcttcctcacatctctccttctcttcc
actcctgcttatgccagactgatgaagcccagagcctttgagcagctcacaaagcccctc
aagagtggactaagggccagactgtcatcttcttcttctgttccaaacttcttaaagttt
ctggctcctgtagaggaacatgatgactcgtgtctttcaccttccgctcacagagacgtc
gcggccctgtccagccccggagctgtgtgtgtggtgggacaggacagtccactccgtcac
cgcagacactcctggagacagcagatcttcctcagagtggctacaccacagaaaagctcc
gacacagcagaaagaggagagacgtccctggaggtcggcggtaggcttgcggtagggggt
ggagccggaggcggggacagcgcgctgggaccggttcctgaggagaggaggaagaggagt
cgtgaggagctccgagagttatggaagaaagccatcctgcagcagatcctcctcctgaga
atggaacgagagaaccaaaagctacaggcctctgagagtgacctccaaagcaggcgtctg
aagttggactacgaggagatcacgccttgtcttaaggacgttactctcgtctgggaaaaa
atgctcagcactgcagggagggcaaaggtcaagttcgacacagagaagattcacaccgct
gttgggcagggtgtcccccggcagcacaggggtgaaatctggaagtttctctccgagcag
tatttgttgaggcagcaggtcccgagcaccaaaaaaccgcccaacaacaacgtgccttat
aaagaactactgaagcagctcacatctcaacaacacgccatcctcatagacctgggacgt
acgttccccacacacccgtatttcagcgctcagctgggtgcaggtcagctgtccctctat
aacctgctgaaggcctactctctgctggaccctgaggtgggctactgccagggtctgagc
ttcgtggctggagtgctgctactgcacatgagcgaggaggaggccttcaacatgctcaag
ttcctcatgtacgacatgggactacgcaaacagtacagacctgacatgatcatcctgcag
atccagatgtatcagttatcccggctgctgcacgattatcaccgggagctgtacagtcac
ctggagcagcacgagatcggccccagcctgtacgccgcgccgtggttcctcaccgccttc
gcttcacacttccctctgggctttgtcgccagagtctttgacatgctgttcctgcagggg
tcagaggtcatcttcaaggtggcgctaagcctcctgggaagccacaagcccctgattctg
cagcacgacaatctggagtccatagtggacttcataaagagcacgctgcccaacctggga
ctggtgcagatggagaaaaccatcacccaggtgtttgagatggacatcagtaagcagctg
caggcgtatgaggtggagtaccacgtgctccaggacgagctcctcgacggcccgtccact
ctcagccagtcacagcgcaccgcccagctggagaagaccaacggcagcctgcggcagcaa
aacctcgacctgctggaggaagttcagggggcccatgcgaggatccgtttcctggagtca
catgtcgagggcctgatgcagagcgaggcggtgctgcgtgtggaactcacgtgcctgcag
caggaacactcggacctgcagcacaccgtcactcagctccaggctctgctctccaaccac
ggcatccagtacactccggctccgtcctaa
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